Information for 15-GACCCCTTAAGAGTCA (Motif 19)

A T C G C G T A A G T C A G T C G A T C G T A C A G C T A C G T G T C A C G T A T C A G C G T A T A C G G A C T A G T C G C T A
Reverse Opposite:
C G A T C T A G C G T A A T G C G C A T A G T C C G A T C A G T T C G A C T G A C A T G C T A G C T A G T C A G G C A T T A G C
p-value:1e-12
log p-value:-2.807e+01
Information Content per bp:1.599
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.38%
Number of Background Sequences with motif100.2
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets57.8 +/- 20.9bp
Average Position of motif in Background48.1 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:1
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GACCCCTTAAGAGTCA
CTTAACCACTTAAGGAT--
 A C G T A C G T A C G T A T C G C G T A A G T C A G T C G A T C G T A C A G C T A C G T G T C A C G T A T C A G C G T A T A C G G A C T A G T C G C T A
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:2
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GACCCCTTAAGAGTCA
-ACCACTTAA------
 A T C G C G T A A G T C A G T C G A T C G T A C A G C T A C G T G T C A C G T A T C A G C G T A T A C G G A C T A G T C G C T A
A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GACCCCTTAAGAGTCA
-ACCACTTAA------
 A T C G C G T A A G T C A G T C G A T C G T A C A G C T A C G T G T C A C G T A T C A G C G T A T A C G G A C T A G T C G C T A
A C G T T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:4
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GACCCCTTAAGAGTCA
---CCTTTTATAGNC-
 A T C G C G T A A G T C A G T C G A T C G T A C A G C T A C G T G T C A C G T A T C A G C G T A T A C G G A C T A G T C G C T A
A C G T A C G T A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:5
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GACCCCTTAAGAGTCA
CATAACCACTTAACAAC--
 A C G T A C G T A C G T A T C G C G T A A G T C A G T C G A T C G T A C A G C T A C G T G T C A C G T A T C A G C G T A T A C G G A C T A G T C G C T A
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C A C G T A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:6
Score:0.59
Offset:8
Orientation:forward strand
Alignment:GACCCCTTAAGAGTCA-
--------AAAAGTCAA
 A T C G C G T A A G T C A G T C G A T C G T A C A G C T A C G T G T C A C G T A T C A G C G T A T A C G G A C T A G T C G C T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GACCCCTTAAGAGTCA
-NSCACTYVAV-----
 A T C G C G T A A G T C A G T C G A T C G T A C A G C T A C G T G T C A C G T A T C A G C G T A T A C G G A C T A G T C G C T A
A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GACCCCTTAAGAGTCA
ATAACCACTTGAAAATT-
 A C G T A C G T A T C G C G T A A G T C A G T C G A T C G T A C A G C T A C G T G T C A C G T A T C A G C G T A T A C G G A C T A G T C G C T A
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GACCCCTTAAGAGTCA
-RSCACTYRAG-----
 A T C G C G T A A G T C A G T C G A T C G T A C A G C T A C G T G T C A C G T A T C A G C G T A T A C G G A C T A G T C G C T A
A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T A C G T A C G T A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GACCCCTTAAGAGTCA
-ACCACTTGAA-----
 A T C G C G T A A G T C A G T C G A T C G T A C A G C T A C G T G T C A C G T A T C A G C G T A T A C G G A C T A G T C G C T A
A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T A C G T A C G T A C G T A C G T