Information for 8-TTGCCCCCTGCTG (Motif 5)

A G C T C G A T A T C G T A G C A G T C G T A C G A T C A T G C G C A T C T A G G A T C C G A T T A C G
Reverse Opposite:
A G T C G C T A C A T G A G T C C G T A A T C G C A T G C A T G C T A G A C T G A T G C G C T A C T G A
p-value:1e-15
log p-value:-3.493e+01
Information Content per bp:1.753
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif3.91%
Number of Background Sequences with motif274.6
Percentage of Background Sequences with motif0.57%
Average Position of motif in Targets51.4 +/- 19.7bp
Average Position of motif in Background50.8 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)-1.5
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.81
Offset:1
Orientation:forward strand
Alignment:TTGCCCCCTGCTG---
-GGCCYCCTGCTGDGH
 A G C T C G A T A T C G T A G C A G T C G T A C G A T C A T G C G C A T C T A G G A T C C G A T T A C G A C G T A C G T A C G T
A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.78
Offset:3
Orientation:reverse strand
Alignment:TTGCCCCCTGCTG--
---CCCCCTGCTGTG
 A G C T C G A T A T C G T A G C A G T C G T A C G A T C A T G C G C A T C T A G G A T C C G A T T A C G A C G T A C G T
A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.78
Offset:-5
Orientation:forward strand
Alignment:-----TTGCCCCCTGCTG--
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A G C T C G A T A T C G T A G C A G T C G T A C G A T C A T G C G C A T C T A G G A T C C G A T T A C G A C G T A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF/MA0139.1/Jaspar

Match Rank:4
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--TTGCCCCCTGCTG----
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A G C T C G A T A T C G T A G C A G T C G T A C G A T C A T G C G C A T C T A G G A T C C G A T T A C G A C G T A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

ZIC4/MA0751.1/Jaspar

Match Rank:5
Score:0.75
Offset:1
Orientation:forward strand
Alignment:TTGCCCCCTGCTG---
-GACCCCCCGCTGTGC
 A G C T C G A T A T C G T A G C A G T C G T A C G A T C A T G C G C A T C T A G G A T C C G A T T A C G A C G T A C G T A C G T
A C G T A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

ZIC1/MA0696.1/Jaspar

Match Rank:6
Score:0.74
Offset:1
Orientation:forward strand
Alignment:TTGCCCCCTGCTG--
-GACCCCCCGCTGTG
 A G C T C G A T A T C G T A G C A G T C G T A C G A T C A T G C G C A T C T A G G A T C C G A T T A C G A C G T A C G T
A C G T A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---TTGCCCCCTGCTG----
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A G C T C G A T A T C G T A G C A G T C G T A C G A T C A T G C G C A T C T A G G A T C C G A T T A C G A C G T A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

ZIC3/MA0697.1/Jaspar

Match Rank:8
Score:0.73
Offset:1
Orientation:forward strand
Alignment:TTGCCCCCTGCTG---
-GACCCCCCGCTGCGC
 A G C T C G A T A T C G T A G C A G T C G T A C G A T C A T G C G C A T C T A G G A T C C G A T T A C G A C G T A C G T A C G T
A C G T A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:TTGCCCCCTGCTG-----
---TCNCCTGCTGNGNNN
 A G C T C G A T A T C G T A G C A G T C G T A C G A T C A T G C G C A T C T A G G A T C C G A T T A C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:10
Score:0.66
Offset:6
Orientation:forward strand
Alignment:TTGCCCCCTGCTG---
------CCTGCTGAGH
 A G C T C G A T A T C G T A G C A G T C G T A C G A T C A T G C G C A T C T A G G A T C C G A T T A C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A