Information for 13-GCAAACACWGGCAGGC (Motif 19)

C A T G A G T C T C G A C T G A G T C A G T A C C T G A G T A C C G A T A C T G A T C G A G T C G T C A A C T G C T A G A G T C
Reverse Opposite:
T A C G A G T C A G T C C A G T A C T G A T G C A G T C C G T A A C T G G A C T A C T G A C G T A G C T A G C T T C A G G T A C
p-value:1e-11
log p-value:-2.548e+01
Information Content per bp:1.715
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets60.6 +/- 22.2bp
Average Position of motif in Background14.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0195.1_Zbtb3_2/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GCAAACACWGGCAGGC-
-CAATCACTGGCAGAAT
 C A T G A G T C T C G A C T G A G T C A G T A C C T G A G T A C C G A T A C T G A T C G A G T C G T C A A C T G C T A G A G T C A C G T
A C G T A G T C G C T A T C G A G C A T G T A C C T G A T G A C C G A T A C T G A C T G A G T C C T G A C T A G G C T A C G T A C G A T

Sox2/MA0143.3/Jaspar

Match Rank:2
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GCAAACACWGGCAGGC
---AACAAAGG-----
 C A T G A G T C T C G A C T G A G T C A G T A C C T G A G T A C C G A T A C T G A T C G A G T C G T C A A C T G C T A G A G T C
A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GCAAACACWGGCAGGC
--GAACAATGGN----
 C A T G A G T C T C G A C T G A G T C A G T A C C T G A G T A C C G A T A C T G A T C G A G T C G T C A A C T G C T A G A G T C
A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T A C G T

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:4
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GCAAACACWGGCAGGC
AAGGKGRCGCAGGCA---
 A C G T A C G T C A T G A G T C T C G A C T G A G T C A G T A C C T G A G T A C C G A T A C T G A T C G A G T C G T C A A C T G C T A G A G T C
T G C A C G T A A C T G T C A G C A G T C A T G T C A G G A T C T A C G A G T C T G C A A C T G A C T G T G A C G T C A A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:GCAAACACWGGCAGGC
-VRAACAATGG-----
 C A T G A G T C T C G A C T G A G T C A G T A C C T G A G T A C C G A T A C T G A T C G A G T C G T C A A C T G C T A G A G T C
A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:6
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GCAAACACWGGCAGGC
--RAACAATGGN----
 C A T G A G T C T C G A C T G A G T C A G T A C C T G A G T A C C G A T A C T G A T C G A G T C G T C A A C T G C T A G A G T C
A C G T A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T A C G T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:7
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:GCAAACACWGGCAGGC----
---NAGANTGGCGGGGNGNA
 C A T G A G T C T C G A C T G A G T C A G T A C C T G A G T A C C G A T A C T G A T C G A G T C G T C A A C T G C T A G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:8
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:GCAAACACWGGCAGGC
-GGAACAAAGR-----
 C A T G A G T C T C G A C T G A G T C A G T A C C T G A G T A C C G A T A C T G A T C G A G T C G T C A A C T G C T A G A G T C
A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.51
Offset:7
Orientation:forward strand
Alignment:GCAAACACWGGCAGGC-----
-------CTGGCAGNCTGCCA
 C A T G A G T C T C G A C T G A G T C A G T A C C T G A G T A C C G A T A C T G A T C G A G T C G T C A A C T G C T A G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

Sox6/MA0515.1/Jaspar

Match Rank:10
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:GCAAACACWGGCAGGC
-AAAACAATGG-----
 C A T G A G T C T C G A C T G A G T C A G T A C C T G A G T A C C G A T A C T G A T C G A G T C G T C A A C T G C T A G A G T C
A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T A C G T A C G T