Information for 7-GGCTCCCTGCCCT (Motif 6)

A C T G A C T G A T G C A C G T A G T C A G T C G T A C A C G T A C T G A T G C A G T C A G T C A G C T
Reverse Opposite:
C T G A A C T G A C T G A T C G A G T C C G T A A C T G A C T G C T A G C G T A A T C G G T A C A G T C
p-value:1e-12
log p-value:-2.763e+01
Information Content per bp:1.896
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets57.1 +/- 21.2bp
Average Position of motif in Background47.1 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GGCTCCCTGCCCT
CTGGCAGNCTGCCA-
 A C G T A C G T A C T G A C T G A T G C A C G T A G T C A G T C G T A C A C G T A C T G A T G C A G T C A G T C A G C T
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A A C G T

ESR2/MA0258.2/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GGCTCCCTGCCCT
AGGNCANNGTGACCT
 A C G T A C G T A C T G A C T G A T G C A C G T A G T C A G T C G T A C A C G T A C T G A T G C A G T C A G T C A G C T
C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T

THAP1/MA0597.1/Jaspar

Match Rank:3
Score:0.60
Offset:6
Orientation:forward strand
Alignment:GGCTCCCTGCCCT--
------CTGCCCGCA
 A C T G A C T G A T G C A C G T A G T C A G T C G T A C A C G T A C T G A T G C A G T C A G T C A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GGCTCCCTGCCCT
NAGGTCANTGACCT
 A C G T A C T G A C T G A T G C A C G T A G T C A G T C G T A C A C G T A C T G A T G C A G T C A G T C A G C T
T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T

PB0107.1_Ascl2_2/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GGCTCCCTGCCCT---
CTATCCCCGCCCTATT
 A C T G A C T G A T G C A C G T A G T C A G T C G T A C A C G T A C T G A T G C A G T C A G T C A G C T A C G T A C G T A C G T
A T G C G A C T T G C A C G A T G T A C T A G C G T A C T G A C C T A G A G T C G A T C G A T C A G C T C T G A A C G T G A C T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GGCTCCCTGCCCT-
GGTCANNGTGACCTN
 A C G T A C T G A C T G A T G C A C G T A G T C A G T C G T A C A C G T A C T G A T G C A G T C A G T C A G C T A C G T
C A T G C T A G C A G T A G T C C G T A A T G C T A C G T A C G G C A T T C A G G T C A G A T C G T A C G A C T A C G T

POL013.1_MED-1/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GGCTCCCTGCCCT
-GCTCCG------
 A C T G A C T G A T G C A C G T A G T C A G T C G T A C A C G T A C T G A T G C A G T C A G T C A G C T
A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T A C G T A C G T A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GGCTCCCTGCCCT
TTGGCATGGTGCCA-
 A C G T A C G T A C T G A C T G A T G C A C G T A G T C A G T C G T A C A C G T A C T G A T G C A G T C A G T C A G C T
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GGCTCCCTGCCCT
CTTGGCANNNTGCCAA
 A C G T A C G T A C G T A C T G A C T G A T G C A C G T A G T C A G T C G T A C A C G T A C T G A T G C A G T C A G T C A G C T
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:10
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:GGCTCCCTGCCCT--
-------TGACCTYA
 A C T G A C T G A T G C A C G T A G T C A G T C G T A C A C G T A C T G A T G C A G T C A G T C A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A