Information for 9-CCTTAATCCC (Motif 4)

A T G C A T G C G A C T A C G T C G T A C G T A A C G T A G T C G T A C A G T C
Reverse Opposite:
C T A G A C T G C T A G C G T A A C G T C G A T C G T A C G T A A T C G T A C G
p-value:1e-14
log p-value:-3.308e+01
Information Content per bp:1.844
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.91%
Number of Background Sequences with motif131.0
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets60.4 +/- 24.4bp
Average Position of motif in Background50.2 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PITX3/MA0714.1/Jaspar

Match Rank:1
Score:0.89
Offset:1
Orientation:forward strand
Alignment:CCTTAATCCC
-CTTAATCCC
 A T G C A T G C G A C T A C G T C G T A C G T A A C G T A G T C G T A C A G T C
A C G T T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C

Pitx1/MA0682.1/Jaspar

Match Rank:2
Score:0.88
Offset:2
Orientation:forward strand
Alignment:CCTTAATCCC
--TTAATCCC
 A T G C A T G C G A C T A C G T C G T A C G T A A C G T A G T C G T A C A G T C
A C G T A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:3
Score:0.87
Offset:1
Orientation:forward strand
Alignment:CCTTAATCCC-
-NYTAATCCYB
 A T G C A T G C G A C T A C G T C G T A C G T A A C G T A G T C G T A C A G T C A C G T
A C G T A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T

OTX2/MA0712.1/Jaspar

Match Rank:4
Score:0.85
Offset:2
Orientation:forward strand
Alignment:CCTTAATCCC
--TTAATCCT
 A T G C A T G C G A C T A C G T C G T A C G T A A C G T A G T C G T A C A G T C
A C G T A C G T G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T

GSC/MA0648.1/Jaspar

Match Rank:5
Score:0.85
Offset:1
Orientation:forward strand
Alignment:CCTTAATCCC-
-GCTAATCCCC
 A T G C A T G C G A C T A C G T C G T A C G T A A C G T A G T C G T A C A G T C A C G T
A C G T T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C

GSC2/MA0891.1/Jaspar

Match Rank:6
Score:0.85
Offset:1
Orientation:forward strand
Alignment:CCTTAATCCC-
-CCTAATCCGC
 A T G C A T G C G A C T A C G T C G T A C G T A A C G T A G T C G T A C A G T C A C G T
A C G T T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:7
Score:0.85
Offset:2
Orientation:reverse strand
Alignment:CCTTAATCCC
--YTAATCCY
 A T G C A T G C G A C T A C G T C G T A C G T A A C G T A G T C G T A C A G T C
A C G T A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C

PH0137.1_Pitx1/Jaspar

Match Rank:8
Score:0.85
Offset:-2
Orientation:reverse strand
Alignment:--CCTTAATCCC-----
NTTGTTAATCCCTCTNN
 A C G T A C G T A T G C A T G C G A C T A C G T C G T A C G T A A C G T A G T C G T A C A G T C A C G T A C G T A C G T A C G T A C G T
C G T A C A G T G A C T C A T G G A C T C G A T C G T A C G T A A C G T G A T C A G T C A G T C G A C T A G T C A G C T T G C A C T G A

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.84
Offset:3
Orientation:forward strand
Alignment:CCTTAATCCC-
---TAATCCCN
 A T G C A T G C G A C T A C G T C G T A C G T A A C G T A G T C G T A C A G T C A C G T
A C G T A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G

PH0035.1_Gsc/Jaspar

Match Rank:10
Score:0.83
Offset:-3
Orientation:forward strand
Alignment:---CCTTAATCCC----
AATCGTTAATCCCTTTA
 A C G T A C G T A C G T A T G C A T G C G A C T A C G T C G T A C G T A A C G T A G T C G T A C A G T C A C G T A C G T A C G T A C G T
G C T A T C G A G C A T G T A C T C A G G A C T C G A T C T G A C G T A A C G T G A T C A G T C A T G C A G C T C A G T G C A T T G A C