Information for 8-CSCTGGTGTG (Motif 3)

A G T C T A G C G T A C G A C T A T C G A T C G C G A T A C T G A C G T A T C G
Reverse Opposite:
T A G C G T C A A G T C C G T A T A G C A T G C C T G A A C T G A T C G C T A G
p-value:1e-15
log p-value:-3.461e+01
Information Content per bp:1.717
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif5.96%
Number of Background Sequences with motif624.2
Percentage of Background Sequences with motif1.32%
Average Position of motif in Targets46.3 +/- 23.0bp
Average Position of motif in Background49.7 +/- 31.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--CSCTGGTGTG
CCCCCTGCTGTG
 A C G T A C G T A G T C T A G C G T A C G A C T A T C G A T C G C G A T A C T G A C G T A T C G
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.75
Offset:-4
Orientation:forward strand
Alignment:----CSCTGGTGTG-
GGCCYCCTGCTGDGH
 A C G T A C G T A C G T A C G T A G T C T A G C G T A C G A C T A T C G A T C G C G A T A C T G A C G T A T C G A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--CSCTGGTGTG---
TNTCCTGCTGTGNNG
 A C G T A C G T A G T C T A G C G T A C G A C T A T C G A T C G C G A T A C T G A C G T A T C G A C G T A C G T A C G T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--CSCTGGTGTG---
NNTCCTGCTGTGNNN
 A C G T A C G T A G T C T A G C G T A C G A C T A T C G A T C G C G A T A C T G A C G T A T C G A C G T A C G T A C G T
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CSCTGGTGTG---
TCNCCTGCTGNGNNN
 A C G T A C G T A G T C T A G C G T A C G A C T A T C G A T C G C G A T A C T G A C G T A T C G A C G T A C G T A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

ZIC1/MA0696.1/Jaspar

Match Rank:6
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----CSCTGGTGTG
GACCCCCCGCTGTG
 A C G T A C G T A C G T A C G T A G T C T A G C G T A C G A C T A T C G A T C G C G A T A C T G A C G T A T C G
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G

ZEB1/MA0103.2/Jaspar

Match Rank:7
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CSCTGGTGTG-
--CAGGTGAGG
 A G T C T A G C G T A C G A C T A T C G A T C G C G A T A C T G A C G T A T C G A C G T
A C G T A C G T A G T C C G T A A C T G A C T G A C G T C T A G G C T A C T A G A C T G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:8
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CSCTGGTGTG-
-CCTGCTGAGH
 A G T C T A G C G T A C G A C T A T C G A T C G C G A T A C T G A C G T A T C G A C G T
A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

TCF4/MA0830.1/Jaspar

Match Rank:9
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CSCTGGTGTG
NNCAGGTGCG
 A G T C T A G C G T A C G A C T A T C G A T C G C G A T A C T G A C G T A T C G
G C T A T A C G G A T C C G T A A T C G T A C G A C G T C T A G A G T C C T A G

ZIC3/MA0697.1/Jaspar

Match Rank:10
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----CSCTGGTGTG-
GACCCCCCGCTGCGC
 A C G T A C G T A C G T A C G T A G T C T A G C G T A C G A C T A T C G A T C G C G A T A C T G A C G T A T C G A C G T
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C