Information for 25-CTGGGAGGCACTT (Motif 25)

A T G C A C G T C T A G A C T G T A C G C G T A C T A G A C T G A T G C G T C A A G T C G A C T A C G T
Reverse Opposite:
C G T A C T G A A C T G A C G T A T C G G T A C A G T C A C G T A G T C G T A C A G T C C G T A A T C G
p-value:1e-6
log p-value:-1.541e+01
Information Content per bp:1.812
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif8.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets47.0 +/- 36.9bp
Average Position of motif in Background66.4 +/- 20.5bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:1
Score:0.60
Offset:5
Orientation:forward strand
Alignment:CTGGGAGGCACTT--
-----AAGCACTTAA
 A T G C A C G T C T A G A C T G T A C G C G T A C T A G A C T G A T G C G T C A A G T C G A C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.57
Offset:4
Orientation:forward strand
Alignment:CTGGGAGGCACTT--
----AAGGCAAGTGT
 A T G C A C G T C T A G A C T G T A C G C G T A C T A G A C T G A T G C G T C A A G T C G A C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

Hic1/MA0739.1/Jaspar

Match Rank:3
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CTGGGAGGCACTT
--GGTTGGCAT--
 A T G C A C G T C T A G A C T G T A C G C G T A C T A G A C T G A T G C G T C A A G T C G A C T A C G T
A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:4
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:CTGGGAGGCACTT-
------BGCACGTA
 A T G C A C G T C T A G A C T G T A C G C G T A C T A G A C T G A T G C G T C A A G T C G A C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CTGGGAGGCACTT
CTGTCTGTCACCT
 A T G C A C G T C T A G A C T G T A C G C G T A C T A G A C T G A T G C G T C A A G T C G A C T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

ISL2/MA0914.1/Jaspar

Match Rank:6
Score:0.55
Offset:7
Orientation:forward strand
Alignment:CTGGGAGGCACTT--
-------GCACTTAA
 A T G C A C G T C T A G A C T G T A C G C G T A C T A G A C T G A T G C G T C A A G T C G A C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A

PB0156.1_Plagl1_2/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CTGGGAGGCACTT---
GCTGGGGGGTACCCCTT
 A C G T A T G C A C G T C T A G A C T G T A C G C G T A C T A G A C T G A T G C G T C A A G T C G A C T A C G T A C G T A C G T A C G T
C T A G A G T C G C A T C T A G C A T G A C T G C T A G A C T G A C T G A C G T C T G A G A T C G T A C G T A C G A T C G A C T C G A T

PH0115.1_Nkx2-6/Jaspar

Match Rank:8
Score:0.54
Offset:3
Orientation:forward strand
Alignment:CTGGGAGGCACTT------
---TAAGCCACTTAACATT
 A T G C A C G T C T A G A C T G T A C G C G T A C T A G A C T G A T G C G T C A A G T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T

HES5/MA0821.1/Jaspar

Match Rank:9
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:CTGGGAGGCACTT----
-----TGGCACGTGCCG
 A T G C A C G T C T A G A C T G T A C G C G T A C T A G A C T G A T G C G T C A A G T C G A C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T T C A G T C A G A G T C C T G A A G T C C A T G A G C T A C T G A G T C A G T C C T A G

NKX3-2/MA0122.2/Jaspar

Match Rank:10
Score:0.54
Offset:6
Orientation:forward strand
Alignment:CTGGGAGGCACTT--
------ACCACTTAA
 A T G C A C G T C T A G A C T G T A C G C G T A C T A G A C T G A T G C G T C A A G T C G A C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A