Information for 5-BAGDGGATTATGCTAA (Motif 12)

A G C T C T G A A C T G C G T A A C T G A C T G G T C A G C A T A C G T C T G A A C G T C T A G G A T C A C G T G T C A C G T A
Reverse Opposite:
A C G T A C G T C G T A C T A G A G T C C G T A A G C T C G T A C G T A A C G T A G T C A G T C G A C T G T A C A G C T T C G A
p-value:1e-11
log p-value:-2.572e+01
Information Content per bp:1.788
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.6 +/- 20.9bp
Average Position of motif in Background67.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Crx/MA0467.1/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:BAGDGGATTATGCTAA
AAGAGGATTAG-----
 A G C T C T G A A C T G C G T A A C T G A C T G G T C A G C A T A C G T C T G A A C G T C T A G G A T C A C G T G T C A C G T A
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G A C G T A C G T A C G T A C G T A C G T

PH0015.1_Crx/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--BAGDGGATTATGCTAA
CGTTGGGGATTAGCCT--
 A C G T A C G T A G C T C T G A A C T G C G T A A C T G A C T G G T C A G C A T A C G T C T G A A C G T C T A G G A T C A C G T G T C A C G T A
A G T C A C T G C G A T C G A T T A C G T A C G C T A G A C T G G T C A A C G T C G A T C G T A C T A G A G T C A T G C C A G T A C G T A C G T

POU3F3/MA0788.1/Jaspar

Match Rank:3
Score:0.63
Offset:6
Orientation:forward strand
Alignment:BAGDGGATTATGCTAA---
------ATTATGCTAATTT
 A G C T C T G A A C T G C G T A A C T G A C T G G T C A G C A T A C G T C T G A A C G T C T A G G A T C A C G T G T C A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G A T C G A T C G T A A C G T C A T G A G T C G C A T C G T A C T G A G C A T C G A T C G A T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:4
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:BAGDGGATTATGCTAA
--NGGGATTA------
 A G C T C T G A A C T G C G T A A C T G A C T G G T C A G C A T A C G T C T G A A C G T C T A G G A T C A C G T G T C A C G T A
A C G T A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T A C G T A C G T A C G T A C G T

PITX3/MA0714.1/Jaspar

Match Rank:5
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:BAGDGGATTATGCTAA
---GGGATTANN----
 A G C T C T G A A C T G C G T A A C T G A C T G G T C A G C A T A C G T C T G A A C G T C T A G G A T C A C G T G T C A C G T A
A C G T A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G A C G T A C G T A C G T A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:6
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:BAGDGGATTATGCTAA
---GGGATTAA-----
 A G C T C T G A A C T G C G T A A C T G A C T G G T C A G C A T A C G T C T G A A C G T C T A G G A T C A C G T G T C A C G T A
A C G T A C G T A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A A C G T A C G T A C G T A C G T A C G T

POU2F1/MA0785.1/Jaspar

Match Rank:7
Score:0.61
Offset:6
Orientation:forward strand
Alignment:BAGDGGATTATGCTAA--
------AATATGCAAATT
 A G C T C T G A A C T G C G T A A C T G A C T G G T C A G C A T A C G T C T G A A C G T C T A G G A T C A C G T G T C A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:8
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:BAGDGGATTATGCTAA
--VRGGATTARN----
 A G C T C T G A A C T G C G T A A C T G A C T G G T C A G C A T A C G T C T G A A C G T C T A G G A T C A C G T G T C A C G T A
A C G T A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T A C G T A C G T A C G T

POU3F1/MA0786.1/Jaspar

Match Rank:9
Score:0.61
Offset:7
Orientation:forward strand
Alignment:BAGDGGATTATGCTAA---
-------TTATGCAAATTA
 A G C T C T G A A C T G C G T A A C T G A C T G G T C A G C A T A C G T C T G A A C G T C T A G G A T C A C G T G T C A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A

GSC2/MA0891.1/Jaspar

Match Rank:10
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:BAGDGGATTATGCTAA
--GNGGATTAGN----
 A G C T C T G A A C T G C G T A A C T G A C T G G T C A G C A T A C G T C T G A A C G T C T A G G A T C A C G T G T C A C G T A
A C G T A C G T C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G A C G T A C G T A C G T A C G T