Information for 1-TRAGTAAACA (Motif 1)

C G A T T C G A C G T A C T A G G A C T G T C A G T C A T C G A A G T C C G T A
Reverse Opposite:
A C G T T C A G A C G T A C G T A C G T C T G A G A T C G C A T A G C T G C T A
p-value:1e-240
log p-value:-5.528e+02
Information Content per bp:1.745
Number of Target Sequences with motif354.0
Percentage of Target Sequences with motif54.55%
Number of Background Sequences with motif2990.3
Percentage of Background Sequences with motif6.33%
Average Position of motif in Targets50.8 +/- 21.1bp
Average Position of motif in Background49.3 +/- 32.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.98
Offset:0
Orientation:forward strand
Alignment:TRAGTAAACA
AAAGTAAACA
 C G A T T C G A C G T A C T A G G A C T G T C A G T C A T C G A A G T C C G T A
G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:2
Score:0.98
Offset:0
Orientation:forward strand
Alignment:TRAGTAAACA
AAAGTAAACA
 C G A T T C G A C G T A C T A G G A C T G T C A G T C A T C G A A G T C C G T A
G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:3
Score:0.97
Offset:0
Orientation:reverse strand
Alignment:TRAGTAAACA--
TATGTAAACANG
 C G A T T C G A C G T A C T A G G A C T G T C A G T C A T C G A A G T C C G T A A C G T A C G T
G C A T T C G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C T G A T A C G

FOXA1/MA0148.3/Jaspar

Match Rank:4
Score:0.97
Offset:-1
Orientation:reverse strand
Alignment:-TRAGTAAACA----
CAAAGTAAACANNNN
 A C G T C G A T T C G A C G T A C T A G G A C T G T C A G T C A T C G A A G T C C G T A A C G T A C G T A C G T A C G T
G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A

Foxa2/MA0047.2/Jaspar

Match Rank:5
Score:0.96
Offset:-2
Orientation:reverse strand
Alignment:--TRAGTAAACA
NCTAAGTAAACA
 A C G T A C G T C G A T T C G A C G T A C T A G G A C T G T C A G T C A T C G A A G T C C G T A
T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:6
Score:0.96
Offset:-2
Orientation:reverse strand
Alignment:--TRAGTAAACA---
NCWRWGTAAACANSV
 A C G T A C G T C G A T T C G A C G T A C T A G G A C T G T C A G T C A T C G A A G T C C G T A A C G T A C G T A C G T
T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:7
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:TRAGTAAACA
WAAGTAAAYA
 C G A T T C G A C G T A C T A G G A C T G T C A G T C A T C G A A G T C C G T A
G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A

FOXP2/MA0593.1/Jaspar

Match Rank:8
Score:0.94
Offset:1
Orientation:forward strand
Alignment:TRAGTAAACA--
-AAGTAAACAAA
 C G A T T C G A C G T A C T A G G A C T G T C A G T C A T C G A A G T C C G T A A C G T A C G T
A C G T C T G A C G T A C T A G C G A T C G T A C G T A C G T A A G T C C G T A T C G A C T G A

FOXC2/MA0846.1/Jaspar

Match Rank:9
Score:0.94
Offset:0
Orientation:forward strand
Alignment:TRAGTAAACA--
TAAGTAAACAAA
 C G A T T C G A C G T A C T A G G A C T G T C A G T C A T C G A A G T C C G T A A C G T A C G T
G C A T C T G A G C T A T C A G G A C T G T C A G T C A C T G A A G T C C T G A G C T A G C T A

FOXI1/MA0042.2/Jaspar

Match Rank:10
Score:0.94
Offset:3
Orientation:forward strand
Alignment:TRAGTAAACA
---GTAAACA
 C G A T T C G A C G T A C T A G G A C T G T C A G T C A T C G A A G T C C G T A
A C G T A C G T A C G T T C A G G C A T T G C A G T C A C G T A G A T C T C G A