Information for 11-CTYAGCCAGCCTA (Motif 16)

G A T C A G C T G A C T C G T A A C T G A G T C G T A C C G T A C T A G G T A C A G T C C G A T G T C A
Reverse Opposite:
A C G T C G T A T A C G A C T G G A T C G A C T A C T G A C T G A G T C A C G T C T G A C T G A C T A G
p-value:1e-10
log p-value:-2.377e+01
Information Content per bp:1.732
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.34%
Number of Background Sequences with motif28.2
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets45.7 +/- 24.9bp
Average Position of motif in Background45.9 +/- 31.5bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CTYAGCCAGCCTA
--CAGCC------
 G A T C A G C T G A C T C G T A A C T G A G T C G T A C C G T A C T A G G T A C A G T C C G A T G T C A
A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CTYAGCCAGCCTA
-BCAGACWA----
 G A T C A G C T G A C T C G T A A C T G A G T C G T A C C G T A C T A G G T A C A G T C C G A T G T C A
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

RHOXF1/MA0719.1/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CTYAGCCAGCCTA
ATAATCCC-----
 G A T C A G C T G A C T C G T A A C T G A G T C G T A C C G T A C T A G G T A C A G T C C G A T G T C A
G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CTYAGCCAGCCTA
---TGCCAA----
 G A T C A G C T G A C T C G T A A C T G A G T C G T A C C G T A C T A G G T A C A G T C C G A T G T C A
A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CTYAGCCAGCCTA
DCTCAGCAGG----
 A C G T G A T C A G C T G A C T C G T A A C T G A G T C G T A C C G T A C T A G G T A C A G T C C G A T G T C A
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CTYAGCCAGCCTA
-CGTGCCAAG---
 G A T C A G C T G A C T C G T A A C T G A G T C G T A C C G T A C T A G G T A C A G T C C G A T G T C A
A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

NRL/MA0842.1/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CTYAGCCAGCCTA
GTCAGCANNTN--
 G A T C A G C T G A C T C G T A A C T G A G T C G T A C C G T A C T A G G T A C A G T C C G A T G T C A
T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:8
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CTYAGCCAGCCTA
--ATGCCAGACN-
 G A T C A G C T G A C T C G T A A C T G A G T C G T A C C G T A C T A G G T A C A G T C C G A T G T C A
A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CTYAGCCAGCCTA
GCTAATCC------
 A C G T G A T C A G C T G A C T C G T A A C T G A G T C G T A C C G T A C T A G G T A C A G T C C G A T G T C A
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:10
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---CTYAGCCAGCCTA
CCACACAGCAGGAGA-
 A C G T A C G T A C G T G A T C A G C T G A C T C G T A A C T G A G T C G T A C C G T A C T A G G T A C A G T C C G A T G T C A
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T