Information for 9-TCCTAATCCT (Motif 6)

A C G T T A G C A G T C G A C T C G T A C G T A A C G T A T G C A G T C G A C T
Reverse Opposite:
C T G A A C T G A T C G G T C A A C G T A C G T C T G A C T A G A T C G G T C A
p-value:1e-13
log p-value:-3.005e+01
Information Content per bp:1.839
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.29%
Number of Background Sequences with motif75.9
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets56.2 +/- 26.7bp
Average Position of motif in Background48.9 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:1
Score:0.84
Offset:1
Orientation:forward strand
Alignment:TCCTAATCCT
-GCTAATCC-
 A C G T T A G C A G T C G A C T C G T A C G T A A C G T A T G C A G T C G A C T
A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:2
Score:0.84
Offset:1
Orientation:forward strand
Alignment:TCCTAATCCT-
-NYTAATCCYB
 A C G T T A G C A G T C G A C T C G T A C G T A A C G T A T G C A G T C G A C T A C G T
A C G T A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T

GSC/MA0648.1/Jaspar

Match Rank:3
Score:0.83
Offset:1
Orientation:forward strand
Alignment:TCCTAATCCT-
-GCTAATCCCC
 A C G T T A G C A G T C G A C T C G T A C G T A A C G T A T G C A G T C G A C T A C G T
A C G T T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C

GSC2/MA0891.1/Jaspar

Match Rank:4
Score:0.82
Offset:1
Orientation:forward strand
Alignment:TCCTAATCCT-
-CCTAATCCGC
 A C G T T A G C A G T C G A C T C G T A C G T A A C G T A T G C A G T C G A C T A C G T
A C G T T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:5
Score:0.82
Offset:2
Orientation:reverse strand
Alignment:TCCTAATCCT
--YTAATCCY
 A C G T T A G C A G T C G A C T C G T A C G T A A C G T A T G C A G T C G A C T
A C G T A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C

PITX3/MA0714.1/Jaspar

Match Rank:6
Score:0.82
Offset:1
Orientation:forward strand
Alignment:TCCTAATCCT
-CTTAATCCC
 A C G T T A G C A G T C G A C T C G T A C G T A A C G T A T G C A G T C G A C T
A C G T T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C

OTX2/MA0712.1/Jaspar

Match Rank:7
Score:0.81
Offset:2
Orientation:forward strand
Alignment:TCCTAATCCT
--TTAATCCT
 A C G T T A G C A G T C G A C T C G T A C G T A A C G T A T G C A G T C G A C T
A C G T A C G T G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T

Crx/MA0467.1/Jaspar

Match Rank:8
Score:0.80
Offset:2
Orientation:reverse strand
Alignment:TCCTAATCCT---
--CTAATCCTCTT
 A C G T T A G C A G T C G A C T C G T A C G T A A C G T A T G C A G T C G A C T A C G T A C G T A C G T
A C G T A C G T G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T

Pitx1/MA0682.1/Jaspar

Match Rank:9
Score:0.80
Offset:2
Orientation:forward strand
Alignment:TCCTAATCCT
--TTAATCCC
 A C G T T A G C A G T C G A C T C G T A C G T A A C G T A T G C A G T C G A C T
A C G T A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.79
Offset:3
Orientation:forward strand
Alignment:TCCTAATCCT-
---TAATCCCN
 A C G T T A G C A G T C G A C T C G T A C G T A A C G T A T G C A G T C G A C T A C G T
A C G T A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G