Information for 12-TGYCWGACARCAK (Motif 8)

A C G T A C T G A G T C A G T C C G T A C T A G C G T A A G T C C T G A C T G A A G T C C G T A A C T G
Reverse Opposite:
G T A C A C G T A C T G A G C T A G C T A C T G A C G T A G T C C G A T A C T G C T A G G T A C C G T A
p-value:1e-12
log p-value:-2.837e+01
Information Content per bp:1.873
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.01%
Number of Background Sequences with motif4.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets32.6 +/- 18.7bp
Average Position of motif in Background62.0 +/- 41.5bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---TGYCWGACARCAK
AGGTGHCAGACA----
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G T A C T A G C G T A A G T C C T G A C T G A A G T C C G T A A C T G
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---TGYCWGACARCAK
AGGTGNCAGACAG---
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G T A C T A G C G T A A G T C C T G A C T G A A G T C C G T A A C T G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---TGYCWGACARCAK-
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G T A C T A G C G T A A G T C C T G A C T G A A G T C C G T A A C T G A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:TGYCWGACARCAK
--CCAGACAG---
 A C G T A C T G A G T C A G T C C G T A C T A G C G T A A G T C C T G A C T G A A G T C C G T A A C T G
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TGYCWGACARCAK
BTGABTGACAGS--
 A C G T A C G T A C T G A G T C A G T C C G T A C T A G C G T A A G T C C T G A C T G A A G T C C G T A A C T G
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TGYCWGACARCAK
NTGATTGACAGN--
 A C G T A C G T A C T G A G T C A G T C C G T A C T A G C G T A A G T C C T G A C T G A A G T C C G T A A C T G
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TGYCWGACARCAK
ATGCCAGACN----
 A C G T A C G T A C T G A G T C A G T C C G T A C T A G C G T A A G T C C T G A C T G A A G T C C G T A A C T G
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TGYCWGACARCAK
-VGCTGWCAVB--
 A C G T A C T G A G T C A G T C C G T A C T A G C G T A A G T C C T G A C T G A A G T C C G T A A C T G
A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TGYCWGACARCAK
--CCAGACRSVB-
 A C G T A C T G A G T C A G T C C G T A C T A G C G T A A G T C C T G A C T G A A G T C C G T A A C T G
A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:10
Score:0.61
Offset:3
Orientation:forward strand
Alignment:TGYCWGACARCAK
---TTGACAG---
 A C G T A C T G A G T C A G T C C G T A C T A G C G T A A G T C C T G A C T G A A G T C C G T A A C T G
A C G T A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T