Information for 11-CCGCCGCGGG (Motif 35)

A T G C T G A C C T A G A T G C A T G C A T C G A T G C C A T G A T C G T A C G
Reverse Opposite:
A G T C A T G C G T A C T A C G A T G C T A C G A T C G G A T C A C T G A T C G
p-value:1e-7
log p-value:-1.627e+01
Information Content per bp:1.681
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.45%
Number of Background Sequences with motif225.2
Percentage of Background Sequences with motif0.48%
Average Position of motif in Targets52.0 +/- 22.6bp
Average Position of motif in Background51.8 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0103.1_Zic3_1/Jaspar

Match Rank:1
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---CCGCCGCGGG--
NCCCCCCCGGGGGGN
 A C G T A C G T A C G T A T G C T G A C C T A G A T G C A T G C A T C G A T G C C A T G A T C G T A C G A C G T A C G T
T C G A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G T A C G A C T G C A T G C A T G C A T G T A C G

PB0102.1_Zic2_1/Jaspar

Match Rank:2
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---CCGCCGCGGG--
ACCCCCCCGGGGGGN
 A C G T A C G T A C G T A T G C T G A C C T A G A T G C A T G C A T C G A T G C C A T G A T C G T A C G A C G T A C G T
T G C A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G A T C G A C T G C A T G C A T G C A T G T A C G

PB0101.1_Zic1_1/Jaspar

Match Rank:3
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CCGCCGCGGG--
CACCCCCGGGGGGG
 A C G T A C G T A T G C T G A C C T A G A T G C A T G C A T C G A T G C C A T G A T C G T A C G A C G T A C G T
A T G C G T C A G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G A C T G A T C G

ZIC3/MA0697.1/Jaspar

Match Rank:4
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CCGCCGCGGG--
NCGCAGCGGGGGGTC
 A C G T A C G T A C G T A T G C T G A C C T A G A T G C A T G C A T C G A T G C C A T G A T C G T A C G A C G T A C G T
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C

ZIC4/MA0751.1/Jaspar

Match Rank:5
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CCGCCGCGGG--
NCNCAGCGGGGGGTC
 A C G T A C G T A C G T A T G C T G A C C T A G A T G C A T G C A T C G A T G C C A T G A T C G T A C G A C G T A C G T
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C

ZIC1/MA0696.1/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CCGCCGCGGG--
CACAGCGGGGGGTC
 A C G T A C G T A T G C T G A C C T A G A T G C A T G C A T C G A T G C C A T G A T C G T A C G A C G T A C G T
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CCGCCGCGGG-----
DCHCAGCAGGRGGCC
 A T G C T G A C C T A G A T G C A T G C A T C G A T G C C A T G A T C G T A C G A C G T A C G T A C G T A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

GLIS2/MA0736.1/Jaspar

Match Rank:8
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CCGCCGCGGG--
CTTCGCGGGGGGTC
 A C G T A C G T A T G C T G A C C T A G A T G C A T G C A T C G A T G C C A T G A T C G T A C G A C G T A C G T
T A G C C A G T G A C T G A T C T C A G G A T C C T A G C A T G A C T G C T A G C A T G C T A G A G C T T G A C

E2F4/MA0470.1/Jaspar

Match Rank:9
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CCGCCGCGGG----
---GGGCGGGAAGG
 A T G C T G A C C T A G A T G C A T G C A T C G A T G C C A T G A T C G T A C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G T A C G A T C G A G T C A C T G T A C G T A C G C T G A C T G A T C A G T C A G

NHLH1/MA0048.2/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CCGCCGCGGG
CGCAGCTGCG--
 A C G T A C G T A T G C T G A C C T A G A T G C A T G C A T C G A T G C C A T G A T C G T A C G
T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T A C G T