Information for 2-TSTTTRTWYWSCCAGC (Motif 3)

A C G T A T C G A C G T A C G T A C G T C T A G A C G T C G A T A G C T C G T A A T C G A G T C A G T C G T C A A C T G A G T C
Reverse Opposite:
A C T G A G T C A C G T A C T G A C T G T A C G C G A T T C G A C G T A C G T A A G T C C G T A C G T A C G T A A T G C C G T A
p-value:1e-19
log p-value:-4.434e+01
Information Content per bp:1.839
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.15%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets39.9 +/- 14.8bp
Average Position of motif in Background60.3 +/- 9.2bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0005.1_Forkhead_class/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TSTTTRTWYWSCCAGC
TGTTTATTT-------
 A C G T A T C G A C G T A C G T A C G T C T A G A C G T C G A T A G C T C G T A A T C G A G T C A G T C G T C A A C T G A G T C
G C A T C T A G A G C T G A C T C A G T C T G A A G C T C A G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer

Match Rank:2
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TSTTTRTWYWSCCAGC
CBTGTTTAYAWW------
 A C G T A C G T A C G T A T C G A C G T A C G T A C G T C T A G A C G T C G A T A G C T C G T A A T C G A G T C A G T C G T C A A C T G A G T C
A T G C A C G T A C G T C T A G A C G T A C G T A C G T C G T A A G T C G C T A C G A T G C A T A C G T A C G T A C G T A C G T A C G T A C G T

Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TSTTTRTWYWSCCAGC
NTGTTTAYATWW-----
 A C G T A C G T A T C G A C G T A C G T A C G T C T A G A C G T C G A T A G C T C G T A A T C G A G T C A G T C G T C A A C T G A G T C
C A G T A C G T C T A G A C G T A C G T A C G T C G T A A G C T T G C A G A C T C G T A C G T A A C G T A C G T A C G T A C G T A C G T

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TSTTTRTWYWSCCAGC
NNTGTTTATTTTGGCA--
 A C G T A C G T A C G T A T C G A C G T A C G T A C G T C T A G A C G T C G A T A G C T C G T A A T C G A G T C A G T C G T C A A C T G A G T C
C G A T G A C T C G A T T C A G G A C T A C G T C A G T C T G A G A C T G A C T A G C T C G A T A C T G A T C G G T A C G C T A A C G T A C G T

Foxq1/MA0040.1/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TSTTTRTWYWSCCAGC
TATTGTTTATT--------
 A C G T A C G T A C G T A C G T A T C G A C G T A C G T A C G T C T A G A C G T C G A T A G C T C G T A A T C G A G T C A G T C G T C A A C T G A G T C
G A C T C T G A G C A T C G A T A C T G A C G T A C G T A C G T C T G A A C G T C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:6
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TSTTTRTWYWSCCAGC
NSTGTTTRCWCAGBNNN-
 A C G T A C G T A C G T A T C G A C G T A C G T A C G T C T A G A C G T C G A T A G C T C G T A A T C G A G T C A G T C G T C A A C T G A G T C
G A C T A T G C A C G T C T A G C G A T C A G T C A G T T C G A G A T C G C T A A G T C C G T A T C A G A T G C T A G C G A C T T A C G A C G T

Foxd3/MA0041.1/Jaspar

Match Rank:7
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---TSTTTRTWYWSCCAGC
GAATGTTTGTTT-------
 A C G T A C G T A C G T A C G T A T C G A C G T A C G T A C G T C T A G A C G T C G A T A G C T C G T A A T C G A G T C A G T C G T C A A C T G A G T C
C T A G G C T A G C T A G A C T C T A G A C G T C G A T C A G T C T A G G A C T A C G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

FOXC2/MA0846.1/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TSTTTRTWYWSCCAGC
TTTGTTTACTTA------
 A C G T A C G T A C G T A T C G A C G T A C G T A C G T C T A G A C G T C G A T A G C T C G T A A T C G A G T C A G T C G T C A A C T G A G T C
C G A T C G A T G A C T T C A G G A C T C A G T C A G T C T G A A G T C C G A T G A C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T

FOXL1/MA0033.2/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TSTTTRTWYWSCCAGC
TGTTTAC---------
 A C G T A T C G A C G T A C G T A C G T C T A G A C G T C G A T A G C T C G T A A T C G A G T C A G T C G T C A A C T G A G T C
C A G T C T A G A C G T C A G T A C G T C T G A G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TSTTTRTWYWSCCAGC
TGTTTACTTT------
 A C G T A T C G A C G T A C G T A C G T C T A G A C G T C G A T A G C T C G T A A T C G A G T C A G T C G T C A A C T G A G T C
A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T A C G T A C G T A C G T A C G T A C G T A C G T