Information for 14-RTCTAGTCCTTAG (Motif 17)

T C G A A C G T A G T C C G A T C G T A T C A G A C G T T A G C A G T C C G A T A C G T C T G A A C T G
Reverse Opposite:
A G T C A G C T T G C A C G T A C T A G A T C G T C G A A G T C A C G T C G T A T C A G G T C A A G C T
p-value:1e-10
log p-value:-2.518e+01
Information Content per bp:1.712
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif2.01%
Number of Background Sequences with motif73.5
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets48.2 +/- 24.7bp
Average Position of motif in Background50.4 +/- 31.8bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:1
Score:0.57
Offset:1
Orientation:forward strand
Alignment:RTCTAGTCCTTAG
-NYTAATCCYB--
 T C G A A C G T A G T C C G A T C G T A T C A G A C G T T A G C A G T C C G A T A C G T C T G A A C T G
A C G T A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T A C G T A C G T

OTX2/MA0712.1/Jaspar

Match Rank:2
Score:0.56
Offset:2
Orientation:forward strand
Alignment:RTCTAGTCCTTAG
--TTAATCCT---
 T C G A A C G T A G T C C G A T C G T A T C A G A C G T T A G C A G T C C G A T A C G T C T G A A C T G
A C G T A C G T G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T A C G T A C G T A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:3
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:RTCTAGTCCTTAG
--YTAATCCY---
 T C G A A C G T A G T C C G A T C G T A T C A G A C G T T A G C A G T C C G A T A C G T C T G A A C T G
A C G T A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:4
Score:0.55
Offset:1
Orientation:forward strand
Alignment:RTCTAGTCCTTAG
-GCTAATCC----
 T C G A A C G T A G T C C G A T C G T A T C A G A C G T T A G C A G T C C G A T A C G T C T G A A C T G
A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T A C G T

PH0112.1_Nkx2-3/Jaspar

Match Rank:5
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-RTCTAGTCCTTAG--
CNTTAAGTACTTAANG
 A C G T T C G A A C G T A G T C C G A T C G T A T C A G A C G T T A G C A G T C C G A T A C G T C T G A A C T G A C G T A C G T
G A T C C G T A G A C T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T C G T A T C G A T C G A C T A G

Pitx1/MA0682.1/Jaspar

Match Rank:6
Score:0.53
Offset:2
Orientation:forward strand
Alignment:RTCTAGTCCTTAG
--TTAATCCC---
 T C G A A C G T A G T C C G A T C G T A T C A G A C G T T A G C A G T C C G A T A C G T C T G A A C T G
A C G T A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C A C G T A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:7
Score:0.52
Offset:1
Orientation:forward strand
Alignment:RTCTAGTCCTTAG
-GCTAATCCCC--
 T C G A A C G T A G T C C G A T C G T A T C A G A C G T T A G C A G T C C G A T A C G T C T G A A C T G
A C G T T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C A C G T A C G T

OTX1/MA0711.1/Jaspar

Match Rank:8
Score:0.52
Offset:2
Orientation:forward strand
Alignment:RTCTAGTCCTTAG
--TTAATCCG---
 T C G A A C G T A G T C C G A T C G T A T C A G A C G T T A G C A G T C C G A T A C G T C T G A A C T G
A C G T A C G T G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G A C G T A C G T A C G T

GSC2/MA0891.1/Jaspar

Match Rank:9
Score:0.51
Offset:1
Orientation:forward strand
Alignment:RTCTAGTCCTTAG
-CCTAATCCGC--
 T C G A A C G T A G T C C G A T C G T A T C A G A C G T T A G C A G T C C G A T A C G T C T G A A C T G
A C G T T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C A C G T A C G T

PITX3/MA0714.1/Jaspar

Match Rank:10
Score:0.51
Offset:1
Orientation:forward strand
Alignment:RTCTAGTCCTTAG
-CTTAATCCC---
 T C G A A C G T A G T C C G A T C G T A T C A G A C G T T A G C A G T C C G A T A C G T C T G A A C T G
A C G T T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T A C G T A C G T