Information for 8-GCTAATCCGA (Motif 9)

C T A G G A T C C G A T C G T A G C T A A G C T G A T C G T A C C A T G G T C A
Reverse Opposite:
C A G T G T A C C A T G C T A G T C G A C G A T G C A T C G T A C T A G A G T C
p-value:1e-13
log p-value:-3.104e+01
Information Content per bp:1.686
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif3.46%
Number of Background Sequences with motif238.8
Percentage of Background Sequences with motif0.50%
Average Position of motif in Targets52.5 +/- 26.1bp
Average Position of motif in Background48.3 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:1
Score:0.86
Offset:0
Orientation:forward strand
Alignment:GCTAATCCGA
GCTAATCC--
 C T A G G A T C C G A T C G T A G C T A A G C T G A T C G T A C C A T G G T C A
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:2
Score:0.83
Offset:0
Orientation:forward strand
Alignment:GCTAATCCGA
GCTAATCCCC
 C T A G G A T C C G A T C G T A G C T A A G C T G A T C G T A C C A T G G T C A
T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C

GSC2/MA0891.1/Jaspar

Match Rank:3
Score:0.82
Offset:0
Orientation:forward strand
Alignment:GCTAATCCGA
CCTAATCCGC
 C T A G G A T C C G A T C G T A G C T A A G C T G A T C G T A C C A T G G T C A
T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:4
Score:0.80
Offset:1
Orientation:reverse strand
Alignment:GCTAATCCGA
-YTAATCCY-
 C T A G G A T C C G A T C G T A G C T A A G C T G A T C G T A C C A T G G T C A
A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T

OTX1/MA0711.1/Jaspar

Match Rank:5
Score:0.80
Offset:1
Orientation:forward strand
Alignment:GCTAATCCGA
-TTAATCCG-
 C T A G G A T C C G A T C G T A G C T A A G C T G A T C G T A C C A T G G T C A
A C G T G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G A C G T

PH0035.1_Gsc/Jaspar

Match Rank:6
Score:0.79
Offset:-4
Orientation:forward strand
Alignment:----GCTAATCCGA---
AATCGTTAATCCCTTTA
 A C G T A C G T A C G T A C G T C T A G G A T C C G A T C G T A G C T A A G C T G A T C G T A C C A T G G T C A A C G T A C G T A C G T
G C T A T C G A G C A T G T A C T C A G G A C T C G A T C T G A C G T A A C G T G A T C A G T C A T G C A G C T C A G T G C A T T G A C

OTX2/MA0712.1/Jaspar

Match Rank:7
Score:0.79
Offset:1
Orientation:forward strand
Alignment:GCTAATCCGA
-TTAATCCT-
 C T A G G A T C C G A T C G T A G C T A A G C T G A T C G T A C C A T G G T C A
A C G T G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T A C G T

PH0015.1_Crx/Jaspar

Match Rank:8
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--GCTAATCCGA----
AGGCTAATCCCCAANG
 A C G T A C G T C T A G G A T C C G A T C G T A G C T A A G C T G A T C G T A C C A T G G T C A A C G T A C G T A C G T A C G T
G T C A T A C G T C A G G A T C C G A T C G T A C G T A A C G T A G T C A G T C A T G C A T G C G C T A G C T A T G A C T C A G

PITX3/MA0714.1/Jaspar

Match Rank:9
Score:0.78
Offset:0
Orientation:forward strand
Alignment:GCTAATCCGA
CTTAATCCC-
 C T A G G A T C C G A T C G T A G C T A A G C T G A T C G T A C C A T G G T C A
T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T

PH0139.1_Pitx3/Jaspar

Match Rank:10
Score:0.78
Offset:-4
Orientation:reverse strand
Alignment:----GCTAATCCGA--
GNNAGCTAATCCCCCN
 A C G T A C G T A C G T A C G T C T A G G A T C C G A T C G T A G C T A A G C T G A T C G T A C C A T G G T C A A C G T A C G T
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T