Information for 7-AGTCATTCAT (Motif 5)

C G T A A T C G A G C T G A T C G C T A G A C T G C A T G A T C C G T A A G C T
Reverse Opposite:
T C G A G C A T C T A G C G T A C T G A C G A T C T A G T C G A T A G C G C A T
p-value:1e-17
log p-value:-4.110e+01
Information Content per bp:1.654
Number of Target Sequences with motif101.0
Percentage of Target Sequences with motif13.43%
Number of Background Sequences with motif2444.2
Percentage of Background Sequences with motif5.07%
Average Position of motif in Targets46.0 +/- 28.7bp
Average Position of motif in Background50.8 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0028.1_Hbp1_1/Jaspar

Match Rank:1
Score:0.79
Offset:-3
Orientation:reverse strand
Alignment:---AGTCATTCAT---
NNCATTCATTCATNNN
 A C G T A C G T A C G T C G T A A T C G A G C T G A T C G C T A G A C T G C A T G A T C C G T A A G C T A C G T A C G T A C G T
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

PB0178.1_Sox8_2/Jaspar

Match Rank:2
Score:0.74
Offset:2
Orientation:forward strand
Alignment:AGTCATTCAT------
--ACATTCATGACACG
 C G T A A T C G A G C T G A T C G C T A G A C T G C A T G A T C C G T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:3
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:AGTCATTCAT
-GTCATN---
 C G T A A T C G A G C T G A T C G C T A G A C T G C A T G A T C C G T A A G C T
A C G T T C A G A C G T G A T C C G T A A G C T A T C G A C G T A C G T A C G T

PH0073.1_Hoxc9/Jaspar

Match Rank:4
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---AGTCATTCAT---
GGAGGTCATTAATTAT
 A C G T A C G T A C G T C G T A A T C G A G C T G A T C G C T A G A C T G C A T G A T C C G T A A G C T A C G T A C G T A C G T
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:5
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AGTCATTCAT-----
GACCACATTCATACAAT
 A C G T A C G T C G T A A T C G A G C T G A T C G C T A G A C T G C A T G A T C C G T A A G C T A C G T A C G T A C G T A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:6
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:AGTCATTCAT--
RGCCATYAATCA
 C G T A A T C G A G C T G A T C G C T A G A C T G C A T G A T C C G T A A G C T A C G T A C G T
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AGTCATTCAT
NCTGTCAATCAN
 A C G T A C G T C G T A A T C G A G C T G A T C G C T A G A C T G C A T G A T C C G T A A G C T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:8
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AGTCATTCAT
SCTGTCAVTCAV
 A C G T A C G T C G T A A T C G A G C T G A T C G C T A G A C T G C A T G A T C C G T A A G C T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

BATF::JUN/MA0462.1/Jaspar

Match Rank:9
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--AGTCATTCAT
TGAGTCATTTC-
 A C G T A C G T C G T A A T C G A G C T G A T C G C T A G A C T G C A T G A T C C G T A A G C T
C G A T A C T G C G T A A T C G A C G T G T A C C G T A C A G T G C A T G A C T G A T C A C G T

PH0120.1_Nkx6-3/Jaspar

Match Rank:10
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---AGTCATTCAT----
CNNANTAATTAATTNNC
 A C G T A C G T A C G T C G T A A T C G A G C T G A T C G C T A G A C T G C A T G A T C C G T A A G C T A C G T A C G T A C G T A C G T
T G A C T C G A T G C A T C G A A C T G G A C T T G C A C G T A G A C T G A C T C T G A G C T A C G A T C G A T C G A T A C G T G A T C