Information for 12-GAAAGGGTTA (Motif 24)

A T C G C T G A C G T A C T G A A C T G C A T G C T A G A C G T A C G T C G T A
Reverse Opposite:
C G A T G T C A C G T A A G T C G T A C G T A C A G C T A C G T A G C T A T G C
p-value:1e-9
log p-value:-2.285e+01
Information Content per bp:1.851
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.26%
Number of Background Sequences with motif136.8
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets40.6 +/- 28.3bp
Average Position of motif in Background43.5 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:GAAAGGGTTA
--NGGGATTA
 A T C G C T G A C G T A C T G A A C T G C A T G C T A G A C G T A C G T C G T A
A C G T A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A

PH0138.1_Pitx2/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GAAAGGGTTA------
TGAAGGGATTAATCATC
 A C G T A T C G C T G A C G T A C T G A A C T G C A T G C T A G A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:3
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:GAAAGGGTTA--
--VRGGATTARN
 A T C G C T G A C G T A C T G A A C T G C A T G C T A G A C G T A C G T C G T A A C G T A C G T
A C G T A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:4
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GAAAGGGTTA
ANGNAAAGGTCA
 A C G T A C G T A T C G C T G A C G T A C T G A A C T G C A T G C T A G A C G T A C G T C G T A
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A

Crx/MA0467.1/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GAAAGGGTTA-
AAGAGGATTAG
 A T C G C T G A C G T A C T G A A C T G C A T G C T A G A C G T A C G T C G T A A C G T
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G

PH0129.1_Otx1/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GAAAGGGTTA------
AGAGGGGATTAATTTAT
 A C G T A T C G C T G A C G T A C T G A A C T G C A T G C T A G A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C A T G C G T A C T A G T A C G C T A G C A T G G T C A A C G T C G A T C G T A C G T A G A C T G C A T G A C T G C T A A G C T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:7
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GAAAGGGTTA-
-AAGGTGTKAA
 A T C G C T G A C G T A C T G A A C T G C A T G C T A G A C G T A C G T C G T A A C G T
A C G T C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A

Dmbx1/MA0883.1/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GAAAGGGTTA-----
TGAACCGGATTAATGAA
 A C G T A C G T A T C G C T G A C G T A C T G A A C T G C A T G C T A G A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
G C A T C T A G C T G A C G T A G T A C T G A C T C A G A T C G G T C A A C G T G A C T C G T A C T G A A C G T A T C G G C A T C G T A

PH0025.1_Dmbx1/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GAAAGGGTTA-----
TGAACCGGATTAATGAA
 A C G T A C G T A T C G C T G A C G T A C T G A A C T G C A T G C T A G A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
G C A T C T A G C T G A C G T A G T A C T G A C T C A G A T C G G T C A A C G T G A C T C G T A C T G A A C G T A T C G G C A T C G T A

PITX3/MA0714.1/Jaspar

Match Rank:10
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GAAAGGGTTA--
---GGGATTANN
 A T C G C T G A C G T A C T G A A C T G C A T G C T A G A C G T A C G T C G T A A C G T A C G T
A C G T A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G