Information for 11-RAGGGCCACTTAAGTG (Motif 13)

T C A G C G T A T A C G C A T G A T C G G T A C A G T C G T C A A G T C A C G T A C G T G T C A G T C A A C T G G A C T C T A G
Reverse Opposite:
A G T C C G T A T A G C A C G T A C G T C G T A C G T A A C T G A C G T T A C G C A T G A T G C G T A C A T G C C G A T A G T C
p-value:1e-11
log p-value:-2.743e+01
Information Content per bp:1.716
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.5 +/- 28.7bp
Average Position of motif in Background50.6 +/- 5.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:1
Score:0.73
Offset:0
Orientation:forward strand
Alignment:RAGGGCCACTTAAGTG-
CTTAACCACTTAAGGAT
 T C A G C G T A T A C G C A T G A T C G G T A C A G T C G T C A A G T C A C G T A C G T G T C A G T C A A C T G G A C T C T A G A C G T
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:2
Score:0.72
Offset:4
Orientation:forward strand
Alignment:RAGGGCCACTTAAGTG
----ACCACTTAA---
 T C A G C G T A T A C G C A T G A T C G G T A C A G T C G T C A A G T C A C G T A C G T G T C A G T C A A C T G G A C T C T A G
A C G T A C G T A C G T A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:3
Score:0.72
Offset:4
Orientation:forward strand
Alignment:RAGGGCCACTTAAGTG
----ACCACTTAA---
 T C A G C G T A T A C G C A T G A T C G G T A C A G T C G T C A A G T C A C G T A C G T G T C A G T C A A C T G G A C T C T A G
A C G T A C G T A C G T A C G T T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:4
Score:0.69
Offset:4
Orientation:forward strand
Alignment:RAGGGCCACTTAAGTG
----ACCACTTGAA--
 T C A G C G T A T A C G C A T G A T C G G T A C A G T C G T C A A G T C A C G T A C G T G T C A G T C A A C T G G A C T C T A G
A C G T A C G T A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:5
Score:0.68
Offset:5
Orientation:forward strand
Alignment:RAGGGCCACTTAAGTG
-----CCACTTGAA--
 T C A G C G T A T A C G C A T G A T C G G T A C A G T C G T C A A G T C A C G T A C G T G T C A G T C A A C T G G A C T C T A G
A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:6
Score:0.67
Offset:4
Orientation:forward strand
Alignment:RAGGGCCACTTAAGTG
----RSCACTYRAG--
 T C A G C G T A T A C G C A T G A T C G G T A C A G T C G T C A A G T C A C G T A C G T G T C A G T C A A C T G G A C T C T A G
A C G T A C G T A C G T A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:7
Score:0.66
Offset:0
Orientation:forward strand
Alignment:RAGGGCCACTTAAGTG-
CATAACCACTTAACAAC
 T C A G C G T A T A C G C A T G A T C G G T A C A G T C G T C A A G T C A C G T A C G T G T C A G T C A A C T G G A C T C T A G A C G T
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:8
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:RAGGGCCACTTAAGTG
----NSCACTYVAV--
 T C A G C G T A T A C G C A T G A T C G G T A C A G T C G T C A A G T C A C G T A C G T G T C A G T C A A C T G G A C T C T A G
A C G T A C G T A C G T A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T

PH0114.1_Nkx2-5/Jaspar

Match Rank:9
Score:0.65
Offset:1
Orientation:forward strand
Alignment:RAGGGCCACTTAAGTG-
-TAAGCCACTTGAATTT
 T C A G C G T A T A C G C A T G A T C G G T A C A G T C G T C A A G T C A C G T A C G T G T C A G T C A A C T G G A C T C T A G A C G T
A C G T G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.65
Offset:3
Orientation:forward strand
Alignment:RAGGGCCACTTAAGTG
---AASCACTCAA---
 T C A G C G T A T A C G C A T G A T C G G T A C A G T C G T C A A G T C A C G T A C G T G T C A G T C A A C T G G A C T C T A G
A C G T A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T A C G T