Information for 1-CCWTTGTHATGCAAAT (Motif 1)

A T G C G A T C C G T A A C G T C G A T T A C G C G A T G C A T C G T A A C G T A C T G A G T C G C T A T C G A T C G A C G A T
Reverse Opposite:
G C T A A G C T A G C T C G A T T C A G G T A C C G T A G C A T C G A T G C T A A T G C C G T A T G C A C G A T C A T G T A C G
p-value:1e-61
log p-value:-1.417e+02
Information Content per bp:1.607
Number of Target Sequences with motif85.0
Percentage of Target Sequences with motif11.30%
Number of Background Sequences with motif447.9
Percentage of Background Sequences with motif0.93%
Average Position of motif in Targets55.0 +/- 23.3bp
Average Position of motif in Background50.4 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.93
Offset:1
Orientation:reverse strand
Alignment:CCWTTGTHATGCAAAT
-CATTGTTATGCAAAT
 A T G C G A T C C G T A A C G T C G A T T A C G C G A T G C A T C G T A A C G T A C T G A G T C G C T A T C G A T C G A C G A T
A C G T G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:2
Score:0.93
Offset:1
Orientation:forward strand
Alignment:CCWTTGTHATGCAAAT
-CTTTGTTATGCAAAT
 A T G C G A T C C G T A A C G T C G A T T A C G C G A T G C A T C G T A A C G T A C T G A G T C G C T A T C G A T C G A C G A T
A C G T A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.73
Offset:6
Orientation:reverse strand
Alignment:CCWTTGTHATGCAAAT
------TTATGCAAAT
 A T G C G A T C C G T A A C G T C G A T T A C G C G A T G C A T C G T A A C G T A C T G A G T C G C T A T C G A T C G A C G A T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.72
Offset:7
Orientation:forward strand
Alignment:CCWTTGTHATGCAAAT---
-------TATGCWAATBAV
 A T G C G A T C C G T A A C G T C G A T T A C G C G A T G C A T C G T A A C G T A C T G A G T C G C T A T C G A T C G A C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

POU3F1/MA0786.1/Jaspar

Match Rank:5
Score:0.72
Offset:6
Orientation:forward strand
Alignment:CCWTTGTHATGCAAAT--
------TTATGCAAATTA
 A T G C G A T C C G T A A C G T C G A T T A C G C G A T G C A T C G T A A C G T A C T G A G T C G C T A T C G A T C G A C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A

POU5F1B/MA0792.1/Jaspar

Match Rank:6
Score:0.71
Offset:7
Orientation:forward strand
Alignment:CCWTTGTHATGCAAAT
-------TATGCAAAT
 A T G C G A T C C G T A A C G T C G A T T A C G C G A T G C A T C G T A A C G T A C T G A G T C G C T A T C G A T C G A C G A T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T

POU2F2/MA0507.1/Jaspar

Match Rank:7
Score:0.71
Offset:6
Orientation:reverse strand
Alignment:CCWTTGTHATGCAAAT---
------ATATGCAAATNNN
 A T G C G A T C C G T A A C G T C G A T T A C G C G A T G C A T C G T A A C G T A C T G A G T C G C T A T C G A T C G A C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.70
Offset:7
Orientation:forward strand
Alignment:CCWTTGTHATGCAAAT---
-------WATGCAAATGAG
 A T G C G A T C C G T A A C G T C G A T T A C G C G A T G C A T C G T A A C G T A C T G A G T C G C T A T C G A T C G A C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

POU3F2/MA0787.1/Jaspar

Match Rank:9
Score:0.70
Offset:6
Orientation:forward strand
Alignment:CCWTTGTHATGCAAAT--
------TTATGCAAATTA
 A T G C G A T C C G T A A C G T C G A T T A C G C G A T G C A T C G T A A C G T A C T G A G T C G C T A T C G A T C G A C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T T C G A G A C T C A T G A G T C G C T A C G T A G C T A C G A T A C G T G C T A

Pou2f3/MA0627.1/Jaspar

Match Rank:10
Score:0.70
Offset:4
Orientation:forward strand
Alignment:CCWTTGTHATGCAAAT----
----TTGTATGCAAATTAGA
 A T G C G A T C C G T A A C G T C G A T T A C G C G A T G C A T C G T A A C G T A C T G A G T C G C T A T C G A T C G A C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A