Information for 3-TTAGGCTCCADACATG (Motif 4)

A G C T A G C T C T G A C T A G A C T G A T G C A C G T A T G C G T A C C G T A C A G T C T G A G T A C C G T A A C G T A C T G
Reverse Opposite:
G T A C C G T A C G A T A C T G A G C T G C T A A C G T A C T G A T C G G T C A A T C G A G T C A G T C G A C T C T G A C T G A
p-value:1e-10
log p-value:-2.433e+01
Information Content per bp:1.717
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif9.30%
Number of Background Sequences with motif5.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets75.0 +/- 20.3bp
Average Position of motif in Background34.2 +/- 11.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

E2F1/MA0024.3/Jaspar

Match Rank:1
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TTAGGCTCCADACATG
TTTGGCGCCAAA----
 A G C T A G C T C T G A C T A G A C T G A T G C A C G T A T G C G T A C C G T A C A G T C T G A G T A C C G T A A C G T A C T G
G C A T C G A T C G A T T A C G A T C G A G T C A T C G T A G C A G T C G T C A G C T A C G T A A C G T A C G T A C G T A C G T

PB0113.1_E2F3_2/Jaspar

Match Rank:2
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--TTAGGCTCCADACATG
AGCTCGGCGCCAAAAGC-
 A C G T A C G T A G C T A G C T C T G A C T A G A C T G A T G C A C G T A T G C G T A C C G T A C A G T C T G A G T A C C G T A A C G T A C T G
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C A C G T

PB0112.1_E2F2_2/Jaspar

Match Rank:3
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--TTAGGCTCCADACATG
CCTTCGGCGCCAAAAGG-
 A C G T A C G T A G C T A G C T C T G A C T A G A C T G A T G C A C G T A T G C G T A C C G T A C A G T C T G A G T A C C G T A A C G T A C T G
G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.50
Offset:2
Orientation:forward strand
Alignment:TTAGGCTCCADACATG
--AGGTGHCAGACA--
 A G C T A G C T C T G A C T A G A C T G A T G C A C G T A T G C G T A C C G T A C A G T C T G A G T A C C G T A A C G T A C T G
A C G T A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:5
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:TTAGGCTCCADACATG
--AGGTGNCAGACAG-
 A G C T A G C T C T G A C T A G A C T G A T G C A C G T A T G C G T A C C G T A C A G T C T G A G T A C C G T A A C G T A C T G
A C G T A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.48
Offset:2
Orientation:forward strand
Alignment:TTAGGCTCCADACATG---
--CAAATCCAGACATCACA
 A G C T A G C T C T G A C T A G A C T G A T G C A C G T A T G C G T A C C G T A C A G T C T G A G T A C C G T A A C G T A C T G A C G T A C G T A C G T
A C G T A C G T G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

MF0008.1_MADS_class/Jaspar

Match Rank:7
Score:0.48
Offset:7
Orientation:reverse strand
Alignment:TTAGGCTCCADACATG-
-------CCATATATGG
 A G C T A G C T C T G A C T A G A C T G A T G C A C G T A T G C G T A C C G T A C A G T C T G A G T A C C G T A A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T A C G A T C C G T A G C A T C G T A G C A T G C T A C G A T T C A G C T A G

E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.48
Offset:3
Orientation:forward strand
Alignment:TTAGGCTCCADACATG
---GGCGGGAAAH---
 A G C T A G C T C T G A C T A G A C T G A T G C A C G T A T G C G T A C C G T A C A G T C T G A G T A C C G T A A C G T A C T G
A C G T A C G T A C G T T A C G T A C G G T A C A T C G T A C G T A C G G T C A C T G A C G T A G A C T A C G T A C G T A C G T

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.47
Offset:3
Orientation:reverse strand
Alignment:TTAGGCTCCADACATG
---GGCTCYAKCAYC-
 A G C T A G C T C T G A C T A G A C T G A T G C A C G T A T G C G T A C C G T A C A G T C T G A G T A C C G T A A C G T A C T G
A C G T A C G T A C G T C A T G A C T G A G T C A C G T A G T C G A T C C G T A A C T G T A G C C T G A A G C T T A G C A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.47
Offset:3
Orientation:reverse strand
Alignment:TTAGGCTCCADACATG
---NGCTN--------
 A G C T A G C T C T G A C T A G A C T G A T G C A C G T A T G C G T A C C G T A C A G T C T G A G T A C C G T A A C G T A C T G
A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T