Information for 4-TAATTTAARAGMAWAT (Motif 4)

C G A T C T G A C G T A A G C T C A G T C A G T T G C A G C T A T C G A C G T A C A T G T G C A G C T A C G A T C T G A G C A T
Reverse Opposite:
C G T A A G C T G C T A C G A T A C G T G T A C A C G T A G C T C G A T A C G T G T C A G T C A C T G A C G A T G A C T G C T A
p-value:1e-9
log p-value:-2.301e+01
Information Content per bp:1.589
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif8.43%
Number of Background Sequences with motif1014.8
Percentage of Background Sequences with motif2.03%
Average Position of motif in Targets51.5 +/- 20.4bp
Average Position of motif in Background49.9 +/- 24.3bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0068.1_Hoxc13/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TAATTTAARAGMAWAT
NAATTTTACGAGNTNN-
 A C G T C G A T C T G A C G T A A G C T C A G T C A G T T G C A G C T A T C G A C G T A C A T G T G C A G C T A C G A T C T G A G C A T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TAATTTAARAGMAWAT
ANATTTTACGAGNNNN-
 A C G T C G A T C T G A C G T A A G C T C A G T C A G T T G C A G C T A T C G A C G T A C A T G T G C A G C T A C G A T C T G A G C A T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T A C G T

HOXC13/MA0907.1/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TAATTTAARAGMAWAT
-NTTTTACGAGN----
 C G A T C T G A C G T A A G C T C A G T C A G T T G C A G C T A T C G A C G T A C A T G T G C A G C T A C G A T C T G A G C A T
A C G T C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C A C G T A C G T A C G T A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TAATTTAARAGMAWAT
CGGTTTCAAA------
 C G A T C T G A C G T A A G C T C A G T C A G T T G C A G C T A T C G A C G T A C A T G T G C A G C T A C G A T C T G A G C A T
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T

PB0129.1_Glis2_2/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TAATTTAARAGMAWAT
AATATTAATAAAGA----
 A C G T A C G T C G A T C T G A C G T A A G C T C A G T C A G T T G C A G C T A T C G A C G T A C A T G T G C A G C T A C G A T C T G A G C A T
G C T A C G T A A C G T C T G A C G A T C A G T C T G A G C T A G C A T G C T A C G T A G T C A C T A G T C G A A C G T A C G T A C G T A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.56
Offset:2
Orientation:forward strand
Alignment:TAATTTAARAGMAWAT
--ACATCAAAGG----
 C G A T C T G A C G T A A G C T C A G T C A G T T G C A G C T A T C G A C G T A C A T G T G C A G C T A C G A T C T G A G C A T
A C G T A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:TAATTTAARAGMAWAT
-NATTCAAAT------
 C G A T C T G A C G T A A G C T C A G T C A G T T G C A G C T A T C G A C G T A C A T G T G C A G C T A C G A T C T G A G C A T
A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T A C G T A C G T A C G T A C G T

Dlx1/MA0879.1/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TAATTTAARAGMAWAT
NNTAATTANN--------
 A C G T A C G T C G A T C T G A C G T A A G C T C A G T C A G T T G C A G C T A T C G A C G T A C A T G T G C A G C T A C G A T C T G A G C A T
T A C G T G C A C G A T T G C A G C T A C G A T A C G T C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ALX3/MA0634.1/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TAATTTAARAGMAWAT
NNTAATTAGA--------
 A C G T A C G T C G A T C T G A C G T A A G C T C A G T C A G T T G C A G C T A T C G A C G T A C A T G T G C A G C T A C G A T C T G A G C A T
A C G T A G C T C G A T C T G A C G T A C A G T G A C T C T G A T C A G C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SHOX/MA0630.1/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TAATTTAARAGMAWAT
TTAATTGG---------
 A C G T C G A T C T G A C G T A A G C T C A G T C A G T T G C A G C T A T C G A C G T A C A T G T G C A G C T A C G A T C T G A G C A T
G A C T G C A T T C G A C T G A A C G T C G A T C T A G T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T