Information for 5-CAGRCMGGCWGASARM (Motif 6)

A G T C G T C A A C T G C T A G A G T C G T C A A C T G C T A G A G T C C G T A A C T G C T G A T A G C C G T A C T A G T G C A
Reverse Opposite:
A C G T A G T C A C G T A T C G A G C T A G T C C G A T A C T G A G T C A G T C A C G T A C T G A G T C A G T C A C G T A C T G
p-value:1e-9
log p-value:-2.249e+01
Information Content per bp:1.842
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.18%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets37.2 +/- 19.8bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CAGRCMGGCWGASARM
CCAGACRSVB-------
 A C G T A G T C G T C A A C T G C T A G A G T C G T C A A C T G C T A G A G T C C G T A A C T G C T G A T A G C C G T A C T A G T G C A
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CAGRCMGGCWGASARM
CCAGACAG---------
 A C G T A G T C G T C A A C T G C T A G A G T C G T C A A C T G C T A G A G T C C G T A A C T G C T G A T A G C C G T A C T A G T G C A
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CAGRCMGGCWGASARM
CTGGCAGNCTGCCA--
 A G T C G T C A A C T G C T A G A G T C G T C A A C T G C T A G A G T C C G T A A C T G C T G A T A G C C G T A C T A G T G C A
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CAGRCMGGCWGASARM
----CCTGCTGAGH--
 A G T C G T C A A C T G C T A G A G T C G T C A A C T G C T A G A G T C C G T A A C T G C T G A T A G C C G T A C T A G T G C A
A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:5
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CAGRCMGGCWGASARM
SCAGYCADGCATGAC--
 A C G T A G T C G T C A A C T G C T A G A G T C G T C A A C T G C T A G A G T C C G T A A C T G C T G A T A G C C G T A C T A G T G C A
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-CAGRCMGGCWGASARM
BCAGACWA---------
 A C G T A G T C G T C A A C T G C T A G A G T C G T C A A C T G C T A G A G T C C G T A A C T G C T G A T A G C C G T A C T A G T G C A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:7
Score:0.50
Offset:6
Orientation:forward strand
Alignment:CAGRCMGGCWGASARM
------VGCTGWCAVB
 A G T C G T C A A C T G C T A G A G T C G T C A A C T G C T A G A G T C C G T A A C T G C T G A T A G C C G T A C T A G T G C A
A C G T A C G T A C G T A C G T A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.50
Offset:7
Orientation:reverse strand
Alignment:CAGRCMGGCWGASARM
-------RHTGWCAR-
 A G T C G T C A A C T G C T A G A G T C G T C A A C T G C T A G A G T C C G T A A C T G C T G A T A G C C G T A C T A G T G C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:9
Score:0.49
Offset:3
Orientation:forward strand
Alignment:CAGRCMGGCWGASARM---
---CGAAGCACACAAAATA
 A G T C G T C A A C T G C T A G A G T C G T C A A C T G C T A G A G T C C G T A A C T G C T G A T A G C C G T A C T A G T G C A A C G T A C G T A C G T
A C G T A C G T A C G T G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

PB0060.1_Smad3_1/Jaspar

Match Rank:10
Score:0.48
Offset:-6
Orientation:forward strand
Alignment:------CAGRCMGGCWGASARM
CAAATCCAGACATCACA-----
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T C A A C T G C T A G A G T C G T C A A C T G C T A G A G T C C G T A A C T G C T G A T A G C C G T A C T A G T G C A
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T A C G T A C G T A C G T A C G T