Information for 4-TGGGTTTTTRAATYTT (Motif 5)

A C G T A C T G C T A G A T C G A C G T A C G T A C G T A C G T A C G T C T A G C G T A C G T A C A G T A G T C A C G T A C G T
Reverse Opposite:
C G T A C G T A T C A G G T C A A C G T G A C T G A T C G T C A G T C A C G T A C G T A C G T A A T G C A G T C G T A C C G T A
p-value:1e-10
log p-value:-2.396e+01
Information Content per bp:1.777
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif2.07%
Number of Background Sequences with motif14.4
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets56.0 +/- 27.0bp
Average Position of motif in Background39.6 +/- 21.4bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0148.1_Mtf1_2/Jaspar

Match Rank:1
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TGGGTTTTTRAATYTT
-NNTTTTTCTTATNT-
 A C G T A C T G C T A G A T C G A C G T A C G T A C G T A C G T A C G T C T A G C G T A C G T A C A G T A G T C A C G T A C G T
A C G T A C T G G C A T A C G T C G A T C G A T C G A T C A G T G T A C C G A T C G A T G T C A C G A T G C A T C A G T A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:2
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TGGGTTTTTRAATYTT
TTGACTTTT--------
 A C G T A C G T A C T G C T A G A T C G A C G T A C G T A C G T A C G T A C G T C T A G C G T A C G T A C A G T A G T C A C G T A C G T
C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:3
Score:0.56
Offset:5
Orientation:forward strand
Alignment:TGGGTTTTTRAATYTT
-----ATTTGAATT--
 A C G T A C T G C T A G A T C G A C G T A C G T A C G T A C G T A C G T C T A G C G T A C G T A C A G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T

HSF2/MA0770.1/Jaspar

Match Rank:4
Score:0.54
Offset:4
Orientation:forward strand
Alignment:TGGGTTTTTRAATYTT-
----TTCTAGAACGTTC
 A C G T A C T G C T A G A T C G A C G T A C G T A C G T A C G T A C G T C T A G C G T A C G T A C A G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C A G T T G A C A G C T T C G A C T A G G T C A C G T A A G T C C T A G C G A T G A C T A G T C

HSF1/MA0486.2/Jaspar

Match Rank:5
Score:0.54
Offset:4
Orientation:forward strand
Alignment:TGGGTTTTTRAATYTT-
----TTCTAGAACGTTC
 A C G T A C T G C T A G A T C G A C G T A C G T A C G T A C G T A C G T C T A G C G T A C G T A C A G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C A G T T A G C A G C T T G C A A C T G G T C A C G T A A G T C T C A G G C A T C G A T A G T C

Arid5a/MA0602.1/Jaspar

Match Rank:6
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:TGGGTTTTTRAATYTT--
----NNTNNCAATATTAG
 A C G T A C T G C T A G A T C G A C G T A C G T A C G T A C G T A C G T C T A G C G T A C G T A C A G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

PB0002.1_Arid5a_1/Jaspar

Match Rank:7
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:TGGGTTTTTRAATYTT--
----NNTNNCAATATTAG
 A C G T A C T G C T A G A T C G A C G T A C G T A C G T A C G T A C G T C T A G C G T A C G T A C A G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:8
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:TGGGTTTTTRAATYTT
TGGACTTTGNNCTNTG
 A C G T A C T G C T A G A T C G A C G T A C G T A C G T A C G T A C G T C T A G C G T A C G T A C A G T A G T C A C G T A C G T
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G

Rarb/MA0857.1/Jaspar

Match Rank:9
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:TGGGTTTTTRAATYTT
TGACCTTTTGACCTTT
 A C G T A C T G C T A G A T C G A C G T A C G T A C G T A C G T A C G T C T A G C G T A C G T A C A G T A G T C A C G T A C G T
G A C T T C A G T C G A T G A C A G T C A G C T G A C T C G A T A G C T T A C G G T C A T G A C G T A C A G C T G A C T C G A T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:10
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----TGGGTTTTTRAATYTT
NNATTGGACTTTNGNN----
 A C G T A C G T A C G T A C G T A C G T A C T G C T A G A T C G A C G T A C G T A C G T A C G T A C G T C T A G C G T A C G T A C A G T A G T C A C G T A C G T
C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C A C G T A C G T A C G T A C G T