Information for 1-TTTAACCCCRYTS (Motif 4)

A G C T A C G T A G C T G T C A C G T A A G T C A G T C A G T C A G T C C T A G A G C T A C G T A T C G
Reverse Opposite:
A T C G C G T A C T A G A G C T A C T G A C T G A C T G A C T G A C G T A C G T C T G A C G T A C T G A
p-value:1e-11
log p-value:-2.547e+01
Information Content per bp:1.845
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.48%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.6 +/- 16.7bp
Average Position of motif in Background56.4 +/- 21.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0157.1_Rara_2/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--TTTAACCCCRYTS-
NNCNTGACCCCGCTCT
 A C G T A C G T A G C T A C G T A G C T G T C A C G T A A G T C A G T C A G T C A G T C C T A G A G C T A C G T A T C G A C G T
A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T

PB0030.1_Hnf4a_1/Jaspar

Match Rank:2
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---TTTAACCCCRYTS-
NNANTTGACCCCTNNNN
 A C G T A C G T A C G T A G C T A C G T A G C T G T C A C G T A A G T C A G T C A G T C A G T C C T A G A G C T A C G T A T C G A C G T
A C G T G T A C C G T A T C G A A C G T A C G T C T A G G T C A G T A C G T A C A G T C A G T C C A G T A C T G T C A G G T C A T A C G

PH0137.1_Pitx1/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TTTAACCCCRYTS-
NTTGTTAATCCCTCTNN
 A C G T A C G T A C G T A G C T A C G T A G C T G T C A C G T A A G T C A G T C A G T C A G T C C T A G A G C T A C G T A T C G A C G T
C G T A C A G T G A C T C A T G G A C T C G A T C G T A C G T A A C G T G A T C A G T C A G T C G A C T A G T C A G C T T G C A C T G A

PH0121.1_Obox1/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TTTAACCCCRYTS-
NTAGTTAATCCCCTTAN
 A C G T A C G T A C G T A G C T A C G T A G C T G T C A C G T A A G T C A G T C A G T C A G T C C T A G A G C T A C G T A T C G A C G T
C T A G C G A T G C T A A C T G G C A T C G A T C G T A C T G A A C G T G T A C A G T C G A T C G A T C A G C T A G C T G C T A G C T A

PB0057.1_Rxra_1/Jaspar

Match Rank:5
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TTTAACCCCRYTS-
TGTCGTGACCCCTTAAT
 A C G T A C G T A C G T A G C T A C G T A G C T G T C A C G T A A G T C A G T C A G T C A G T C C T A G A G C T A C G T A T C G A C G T
C A G T A T C G G A C T A G T C C A T G A G C T T C A G G T C A G T A C G T A C A G T C A G T C C G A T G A C T T C G A G T C A A G C T

PH0122.1_Obox2/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TTTAACCCCRYTS-
ATAGTTAATCCCCCTCA
 A C G T A C G T A C G T A G C T A C G T A G C T G T C A C G T A A G T C A G T C A G T C A G T C C T A G A G C T A C G T A T C G A C G T
C T G A C A G T G C T A C A T G G C A T G C A T C G T A G C T A C A G T G T A C A G T C G A T C G A T C G A T C A G C T T G A C G C T A

PB0107.1_Ascl2_2/Jaspar

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TTTAACCCCRYTS----
-CTATCCCCGCCCTATT
 A G C T A C G T A G C T G T C A C G T A A G T C A G T C A G T C A G T C C T A G A G C T A C G T A T C G A C G T A C G T A C G T A C G T
A C G T A T G C G A C T T G C A C G A T G T A C T A G C G T A C T G A C C T A G A G T C G A T C G A T C A G C T C T G A A C G T G A C T

PH0124.1_Obox5_1/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TTTAACCCCRYTS
NANANTTAATCCCNNNN
 A C G T A C G T A C G T A C G T A G C T A C G T A G C T G T C A C G T A A G T C A G T C A G T C A G T C C T A G A G C T A C G T A T C G
C A T G C G T A C T G A C T G A C G A T G C A T C G A T C G T A C G T A C G A T G A T C A G T C A G T C A G C T A G T C G A C T C G T A

PB0013.1_Eomes_1/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TTTAACCCCRYTS-
NNTTTTCACACCTTNNN
 A C G T A C G T A C G T A G C T A C G T A G C T G T C A C G T A A G T C A G T C A G T C A G T C C T A G A G C T A C G T A T C G A C G T
C T G A C T G A C G A T C A G T C A G T A G C T T G A C C T G A A G T C C T G A T A G C G A T C G A C T G A C T C G A T A G C T T G A C

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TTTAACCCCRYTS
-ATCACCCCAT--
 A G C T A C G T A G C T G T C A C G T A A G T C A G T C A G T C A G T C C T A G A G C T A C G T A T C G
A C G T T C G A G C A T A T G C C T G A A T G C T A G C A G T C G T A C T C G A A G C T A C G T A C G T