Information for 3-AGCTGGGAGAAAAAGA (Motif 3)

C G T A A C T G A G T C A C G T A C T G A C T G C T A G C G T A A C T G C G T A C T G A C G T A C G T A C G T A A C T G C G T A
Reverse Opposite:
C G A T A G T C A C G T A C G T A C G T A G C T C G A T A G T C A C G T A G T C A G T C A G T C G T C A A C T G A G T C A C G T
p-value:1e-12
log p-value:-2.893e+01
Information Content per bp:1.921
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.48%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.2 +/- 14.4bp
Average Position of motif in Background34.4 +/- 7.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AGCTGGGAGAAAAAGA---
NNCCTGNAAAAAAAAAAAAA
 A C G T C G T A A C T G A G T C A C G T A C T G A C T G C T A G C G T A A C T G C G T A C T G A C G T A C G T A C G T A A C T G C G T A A C G T A C G T A C G T
G C T A G C T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A C T G A C T G A

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AGCTGGGAGAAAAAGA---
NNCCTGNAAAAAAAAAAAAA
 A C G T C G T A A C T G A G T C A C G T A C T G A C T G C T A G C G T A A C T G C G T A C T G A C G T A C G T A C G T A A C T G C G T A A C G T A C G T A C G T
G C T A C G T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A C T G A C T G A C T G A T C G A C T G A

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:AGCTGGGAGAAAAAGA
----GAAAGTGAAAGT
 C G T A A C T G A G T C A C G T A C T G A C T G C T A G C G T A A C T G C G T A C T G A C G T A C G T A C G T A A C T G C G T A
A C G T A C G T A C G T A C G T T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:4
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----AGCTGGGAGAAAAAGA
NAACAGCTGG----------
 A C G T A C G T A C G T A C G T C G T A A C T G A G T C A C G T A C T G A C T G C T A G C G T A A C T G C G T A C T G A C G T A C G T A C G T A A C T G C G T A
C G A T T G C A T G C A G A T C C G T A A C T G T G A C G A C T C A T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:5
Score:0.53
Offset:4
Orientation:forward strand
Alignment:AGCTGGGAGAAAAAGA
----GGAAGTGAAAST
 C G T A A C T G A G T C A C G T A C T G A C T G C T A G C G T A A C T G C G T A C T G A C G T A C G T A C G T A A C T G C G T A
A C G T A C G T A C G T A C G T C T A G C T A G C G T A C G T A T A C G C G A T C T A G C T G A C T G A C G T A T A C G G A C T

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:6
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----AGCTGGGAGAAAAAGA
NAHCAGCTGD----------
 A C G T A C G T A C G T A C G T C G T A A C T G A G T C A C G T A C T G A C T G C T A G C G T A A C T G C G T A C T G A C G T A C G T A C G T A A C T G C G T A
G T C A T G C A G C T A A G T C C G T A A C T G T G A C G C A T T C A G C A G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PRDM1/MA0508.1/Jaspar

Match Rank:7
Score:0.51
Offset:3
Orientation:forward strand
Alignment:AGCTGGGAGAAAAAGA--
---AGAAAGTGAAAGTGA
 C G T A A C T G A G T C A C G T A C T G A C T G C T A G C G T A A C T G C G T A C T G A C G T A C G T A C G T A A C T G C G T A A C G T A C G T
A C G T A C G T A C G T C G T A C T A G C T G A T C G A C T G A C T A G C A G T C T A G C G T A C T G A C G T A T C A G A C G T C T A G C T G A

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:8
Score:0.51
Offset:0
Orientation:forward strand
Alignment:AGCTGGGAGAAAAAGA
TACTGGAAAAAAAA--
 C G T A A C T G A G T C A C G T A C T G A C T G C T A G C G T A A C T G C G T A C T G A C G T A C G T A C G T A A C T G C G T A
G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---AGCTGGGAGAAAAAGA
CACAGCAGGGGG-------
 A C G T A C G T A C G T C G T A A C T G A G T C A C G T A C T G A C T G C T A G C G T A A C T G C G T A C T G A C G T A C G T A C G T A A C T G C G T A
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer

Match Rank:10
Score:0.50
Offset:4
Orientation:forward strand
Alignment:AGCTGGGAGAAAAAGA
----GRAASTGAAAST
 C G T A A C T G A G T C A C G T A C T G A C T G C T A G C G T A A C T G C G T A C T G A C G T A C G T A C G T A A C T G C G T A
A C G T A C G T A C G T A C G T T C A G T C A G G C T A C G T A T A C G G A C T T C A G T C G A C T G A C G T A T A C G G A C T