Information for 3-CTTTGGCAGT (Motif 13)

A G T C C G A T A G C T A C G T A C T G C T A G G T A C T C G A A C T G C G A T
Reverse Opposite:
C G T A A G T C A C G T A C T G A G T C A G T C C G T A C T G A C G T A A C T G
p-value:1e-7
log p-value:-1.839e+01
Information Content per bp:1.856
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif2.96%
Number of Background Sequences with motif97.0
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets38.6 +/- 21.9bp
Average Position of motif in Background53.3 +/- 31.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.74
Offset:2
Orientation:forward strand
Alignment:CTTTGGCAGT
--TTGGCA--
 A G T C C G A T A G C T A C G T A C T G C T A G G T A C T C G A A C T G C G A T
A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:CTTTGGCAGT
-NTTGGCANN
 A G T C C G A T A G C T A C G T A C T G C T A G G T A C T C G A A C T G C G A T
A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CTTTGGCAGT
NNTTGGCANN
 A G T C C G A T A G C T A C G T A C T G C T A G G T A C T C G A A C T G C G A T
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

Myb/MA0100.2/Jaspar

Match Rank:4
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:CTTTGGCAGT---
---TGGCAGTTGN
 A G T C C G A T A G C T A C G T A C T G C T A G G T A C T C G A A C T G C G A T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CTTTGGCAGT
-CTTGGCAA-
 A G T C C G A T A G C T A C G T A C T G C T A G G T A C T C G A A C T G C G A T
A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:6
Score:0.66
Offset:3
Orientation:forward strand
Alignment:CTTTGGCAGT---
---TGGCAGTTGG
 A G T C C G A T A G C T A C G T A C T G C T A G G T A C T C G A A C T G C G A T A C G T A C G T A C G T
A C G T A C G T A C G T G A C T C T A G C T A G A G T C T G C A A C T G A C G T A C G T C T A G T C A G

PB0149.1_Myb_2/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTTTGGCAGT------
NNNTGGCAGTTGGTNN
 A G T C C G A T A G C T A C G T A C T G C T A G G T A C T C G A A C T G C G A T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:8
Score:0.63
Offset:4
Orientation:forward strand
Alignment:CTTTGGCAGT--
----GGCVGTTR
 A G T C C G A T A G C T A C G T A C T G C T A G G T A C T C G A A C T G C G A T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G C T A G A G T C T C A G A C T G A C G T A C G T C T G A

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.61
Offset:-8
Orientation:forward strand
Alignment:--------CTTTGGCAGT
NNTGTTTATTTTGGCA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G A T A G C T A C G T A C T G C T A G G T A C T C G A A C T G C G A T
C G A T G A C T C G A T T C A G G A C T A C G T C A G T C T G A G A C T G A C T A G C T C G A T A C T G A T C G G T A C G C T A A C G T A C G T

E2F8/MA0865.1/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CTTTGGCAGT---
-TTTGGCGGGAAA
 A G T C C G A T A G C T A C G T A C T G C T A G G T A C T C G A A C T G C G A T A C G T A C G T A C G T
A C G T C G A T A C G T A G C T A T C G C T A G A T G C A T C G C T A G C T A G G T C A C T G A C G T A