Information for 8-GGTTTTAAAGTAGGCG (Motif 11)

A C T G A C T G A C G T A G C T A C G T A C G T C G T A C G T A C G T A C T A G A C G T C G T A A C T G A T C G A G T C A C T G
Reverse Opposite:
G T A C C T A G A T G C G T A C A C G T C G T A A G T C A C G T A C G T C G A T C G T A C G T A C T G A G T C A A G T C A G T C
p-value:1e-8
log p-value:-1.972e+01
Information Content per bp:1.910
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.18%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets22.0 +/- 6.3bp
Average Position of motif in Background69.6 +/- 5.9bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GGTTTTAAAGTAGGCG
CGGTTTCAAA-------
 A C G T A C T G A C T G A C G T A G C T A C G T A C G T C G T A C G T A C G T A C T A G A C G T C G T A A C T G A T C G A G T C A C T G
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.53
Offset:3
Orientation:forward strand
Alignment:GGTTTTAAAGTAGGCG
---CCAAAAATAG---
 A C T G A C T G A C G T A G C T A C G T A C G T C G T A C G T A C G T A C T A G A C G T C G T A A C T G A T C G A G T C A C T G
A C G T A C G T A C G T G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G A C G T A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:3
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GGTTTTAAAGTAGGCG
--ATTTGAATT-----
 A C T G A C T G A C G T A G C T A C G T A C G T C G T A C G T A C G T A C T A G A C G T C G T A A C T G A T C G A G T C A C T G
A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T A C G T A C G T A C G T

MEF2C/MA0497.1/Jaspar

Match Rank:4
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GGTTTTAAAGTAGGCG
ATGCTAAAAATAGAA-
 A C T G A C T G A C G T A G C T A C G T A C G T C G T A C G T A C G T A C T A G A C G T C G T A A C T G A T C G A G T C A C T G
C T G A C G A T C A T G G T A C A G C T G C T A C T G A C T G A C G T A C G T A G A C T C T G A T C A G G T C A G C T A A C G T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.51
Offset:2
Orientation:forward strand
Alignment:GGTTTTAAAGTAGGCG
--DCYAAAAATAGM--
 A C T G A C T G A C G T A G C T A C G T A C G T C G T A C G T A C G T A C T A G A C G T C G T A A C T G A T C G A G T C A C T G
A C G T A C G T C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C A C G T A C G T

PH0066.1_Hoxc11/Jaspar

Match Rank:6
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---GGTTTTAAAGTAGGCG
TAAAGTCGTAAAATAG---
 A C G T A C G T A C G T A C T G A C T G A C G T A G C T A C G T A C G T C G T A C G T A C G T A C T A G A C G T C G T A A C T G A T C G A G T C A C T G
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G A C G T A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:7
Score:0.50
Offset:0
Orientation:forward strand
Alignment:GGTTTTAAAGTAGGCG
NGYCATAAAWCH----
 A C T G A C T G A C G T A G C T A C G T A C G T C G T A C G T A C G T A C T A G A C G T C G T A A C T G A T C G A G T C A C T G
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T A C G T A C G T

PH0065.1_Hoxc10/Jaspar

Match Rank:8
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---GGTTTTAAAGTAGGCG
TAAAGTCGTAAAACGT---
 A C G T A C G T A C G T A C T G A C T G A C G T A G C T A C G T A C G T C G T A C G T A C G T A C T A G A C G T C G T A A C T G A T C G A G T C A C T G
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T A C G T A C G T A C G T

HOXC12/MA0906.1/Jaspar

Match Rank:9
Score:0.49
Offset:0
Orientation:forward strand
Alignment:GGTTTTAAAGTAGGCG
GGTCGTAAAAA-----
 A C T G A C T G A C G T A G C T A C G T A C G T C G T A C G T A C G T A C T A G A C G T C G T A A C T G A T C G A G T C A C T G
C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A A C G T A C G T A C G T A C G T A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:10
Score:0.49
Offset:4
Orientation:reverse strand
Alignment:GGTTTTAAAGTAGGCG
----NTCAAGTGG---
 A C T G A C T G A C G T A G C T A C G T A C G T C G T A C G T A C G T A C T A G A C G T C G T A A C T G A T C G A G T C A C T G
A C G T A C G T A C G T A C G T A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T A C G T A C G T