Information for 1-GAGCCCGGGTCGCAAA (Motif 1)

A T C G C G T A T C A G G T A C A G T C T A G C T A C G A C T G A C T G G A C T A T G C A C T G A T G C G T C A C T G A C T G A
Reverse Opposite:
A G C T A G C T A C G T A T C G A G T C A T C G C T G A A G T C A G T C A G T C A C T G A C T G A C T G A G T C G A C T A T G C
p-value:1e-15
log p-value:-3.556e+01
Information Content per bp:1.710
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.78%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets68.3 +/- 24.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0067.1_Hoxc12/Jaspar

Match Rank:1
Score:0.56
Offset:4
Orientation:forward strand
Alignment:GAGCCCGGGTCGCAAA-----
----TTAGGTCGTAAAATTTC
 A T C G C G T A T C A G G T A C A G T C T A G C T A C G A C T G A C T G G A C T A T G C A C T G A T G C G T C A C T G A C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T G C A T T C G A T C A G T C A G A G C T G T A C C T A G A C G T G C T A C G T A G C T A G C T A G C A T A G C T C G A T G A T C

PH0077.1_Hoxd12/Jaspar

Match Rank:2
Score:0.56
Offset:4
Orientation:forward strand
Alignment:GAGCCCGGGTCGCAAA-----
----CAAGGTCGTAAAATCTT
 A T C G C G T A T C A G G T A C A G T C T A G C T A C G A C T G A C T G G A C T A T G C A C T G A T G C G T C A C T G A C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T G C T A C T G A T A C G T C A G A G C T G T A C C T A G A C G T C G T A C G T A C G T A G C T A G A C T G A T C G C A T C A G T

HOXC12/MA0906.1/Jaspar

Match Rank:3
Score:0.54
Offset:7
Orientation:forward strand
Alignment:GAGCCCGGGTCGCAAA--
-------GGTCGTAAAAA
 A T C G C G T A T C A G G T A C A G T C T A G C T A C G A C T G A C T G G A C T A T G C A C T G A T G C G T C A C T G A C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A

E2F6/MA0471.1/Jaspar

Match Rank:4
Score:0.54
Offset:6
Orientation:forward strand
Alignment:GAGCCCGGGTCGCAAA-
------GGGCGGGAAGG
 A T C G C G T A T C A G G T A C A G T C T A G C T A C G A C T G A C T G G A C T A T G C A C T G A T G C G T C A C T G A C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C A G A C T G G T A C C T A G A C T G T A C G C G T A C T G A T C A G T C A G

PH0076.1_Hoxd11/Jaspar

Match Rank:5
Score:0.53
Offset:4
Orientation:forward strand
Alignment:GAGCCCGGGTCGCAAA-----
----TAAGGTCGTAAAATCCT
 A T C G C G T A T C A G G T A C A G T C T A G C T A C G A C T G A C T G G A C T A T G C A C T G A T G C G T C A C T G A C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T G C T A C T G A T C A G T C A G A G C T G A T C C T A G A C G T C G T A C G T A G C T A G C T A G C A T G A T C G A T C C A G T

HOXC11/MA0651.1/Jaspar

Match Rank:6
Score:0.52
Offset:7
Orientation:forward strand
Alignment:GAGCCCGGGTCGCAAA--
-------GGTCGTAAAAT
 A T C G C G T A T C A G G T A C A G T C T A G C T A C G A C T G A C T G G A C T A T G C A C T G A T G C G T C A C T G A C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C A G G A C T G A T C C T A G C G A T C G T A C G T A G T C A G C T A G C A T

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:7
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GAGCCCGGGTCGCAAA
-TGCCCNNAGGGCA--
 A T C G C G T A T C A G G T A C A G T C T A G C T A C G A C T G A C T G G A C T A T G C A C T G A T G C G T C A C T G A C T G A
A C G T G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.51
Offset:7
Orientation:forward strand
Alignment:GAGCCCGGGTCGCAAA-
-------GGCGGGAARN
 A T C G C G T A T C A G G T A C A G T C T A G C T A C G A C T G A C T G G A C T A T G C A C T G A T G C G T C A C T G A C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A C G G T A C A T C G A C T G T A C G T C G A C T G A T C G A A T C G

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:9
Score:0.51
Offset:1
Orientation:forward strand
Alignment:GAGCCCGGGTCGCAAA
-TGCCCTGAGGGCA--
 A T C G C G T A T C A G G T A C A G T C T A G C T A C G A C T G A C T G G A C T A T G C A C T G A T G C G T C A C T G A C T G A
A C G T G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T

HOXD12/MA0873.1/Jaspar

Match Rank:10
Score:0.51
Offset:7
Orientation:forward strand
Alignment:GAGCCCGGGTCGCAAA--
-------AGTCGTAAAAA
 A T C G C G T A T C A G G T A C A G T C T A G C T A C G A C T G A C T G G A C T A T G C A C T G A T G C G T C A C T G A C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A