Information for 7-AGYACTTAATGCTTAC (Motif 9)

C G T A A C T G A G T C G T C A A G T C A G C T A C G T C T G A G T C A A C G T A T C G A G T C A C G T G A C T T C G A G T A C
Reverse Opposite:
A C T G A C G T C G T A T C G A T A C G A T G C C G T A C A G T A G C T T C G A C T G A A C T G A C G T C T A G A G T C A C G T
p-value:1e-11
log p-value:-2.591e+01
Information Content per bp:1.696
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.08%
Number of Background Sequences with motif10.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets43.4 +/- 24.0bp
Average Position of motif in Background43.3 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-AGYACTTAATGCTTAC
AAGCACTTAA-------
 A C G T C G T A A C T G A G T C G T C A A G T C A G C T A C G T C T G A G T C A A C G T A T C G A G T C A C G T G A C T T C G A G T A C
T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0112.1_Nkx2-3/Jaspar

Match Rank:2
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----AGYACTTAATGCTTAC
CTTTAAGTACTTAATG-----
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A G T C G T C A A G T C A G C T A C G T C T G A G T C A A C G T A T C G A G T C A C G T G A C T T C G A G T A C
G A T C A G C T A G C T G C A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C T G A G A C T C T A G A C G T A C G T A C G T A C G T A C G T

PH0117.1_Nkx3-1/Jaspar

Match Rank:3
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----AGYACTTAATGCTTAC
TACTAAGTACTTAAATG----
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A G T C G T C A A G T C A G C T A C G T C T G A G T C A A C G T A T C G A G T C A C G T G A C T T C G A G T A C
C G A T C G A T G A T C C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T G A C G T A C G A T A T C G A C G T A C G T A C G T A C G T

PH0116.1_Nkx2-9/Jaspar

Match Rank:4
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----AGYACTTAATGCTTAC
TTTTAAGTACTTAAATT----
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A G T C G T C A A G T C A G C T A C G T C T G A G T C A A C G T A T C G A G T C A C G T G A C T T C G A G T A C
C G A T G A C T G C A T C G A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C G T A G C T A C G A T G A C T A C G T A C G T A C G T A C G T

Hmx1/MA0896.1/Jaspar

Match Rank:5
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AGYACTTAATGCTTAC
ACAAGCAATTAATGAAT--
 A C G T A C G T A C G T C G T A A C T G A G T C G T C A A G T C A G C T A C G T C T G A G T C A A C G T A T C G A G T C A C G T G A C T T C G A G T A C
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T A C G T A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AGYACTTAATGCTTAC
ACAAGCAATTAATGAAT--
 A C G T A C G T A C G T C G T A A C T G A G T C G T C A A G T C A G C T A C G T C T G A G T C A A C G T A T C G A G T C A C G T G A C T T C G A G T A C
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T A C G T A C G T

ISL2/MA0914.1/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AGYACTTAATGCTTAC
-GCACTTAA-------
 C G T A A C T G A G T C G T C A A G T C A G C T A C G T C T G A G T C A A C G T A T C G A G T C A C G T G A C T T C G A G T A C
A C G T T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGYACTTAATGCTTAC
ACCACTTAA-------
 C G T A A C T G A G T C G T C A A G T C A G C T A C G T C T G A G T C A A C G T A T C G A G T C A C G T G A C T T C G A G T A C
T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGYACTTAATGCTTAC
ACCACTTAA-------
 C G T A A C T G A G T C G T C A A G T C A G C T A C G T C T G A G T C A A C G T A T C G A G T C A C G T G A C T T C G A G T A C
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hmx2/MA0897.1/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AGYACTTAATGCTTAC
ACAAGCAATTAAAGAAT--
 A C G T A C G T A C G T C G T A A C T G A G T C G T C A A G T C A G C T A C G T C T G A G T C A A C G T A T C G A G T C A C G T G A C T T C G A G T A C
T C G A T A G C T G C A C T G A T C A G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A T C A G T C G A C T G A C A G T A C G T A C G T