Information for 11-AACCCAAAGATTA (Motif 27)

C T G A C G T A A G T C A G T C G T A C C G T A C T G A C G T A C T A G C G T A A C G T A C G T C T G A
Reverse Opposite:
A G C T C G T A C G T A A C G T A G T C A C G T A G C T A C G T A C T G A C T G A C T G A C G T A G C T
p-value:1e-8
log p-value:-1.998e+01
Information Content per bp:1.887
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets61.2 +/- 13.8bp
Average Position of motif in Background69.7 +/- 22.5bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:1
Score:0.60
Offset:6
Orientation:forward strand
Alignment:AACCCAAAGATTA-
------RGGATTAR
 C T G A C G T A A G T C A G T C G T A C C G T A C T G A C G T A C T A G C G T A A C G T A C G T C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:2
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:AACCCAAAGATTA--
-----VRGGATTARN
 C T G A C G T A A G T C A G T C G T A C C G T A C T G A C G T A C T A G C G T A A C G T A C G T C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

PB0121.1_Foxj3_2/Jaspar

Match Rank:3
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AACCCAAAGATTA--
AACACCAAAACAAAGGA
 A C G T A C G T C T G A C G T A A G T C A G T C G T A C C G T A C T G A C G T A C T A G C G T A A C G T A C G T C T G A A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

OTX2/MA0712.1/Jaspar

Match Rank:4
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:AACCCAAAGATTA-
------NGGATTAA
 C T G A C G T A A G T C A G T C G T A C C G T A C T G A C G T A C T A G C G T A A C G T A C G T C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A

VENTX/MA0724.1/Jaspar

Match Rank:5
Score:0.57
Offset:5
Orientation:forward strand
Alignment:AACCCAAAGATTA-
-----ACCGATTAG
 C T G A C G T A A G T C A G T C G T A C C G T A C T G A C G T A C T A G C G T A A C G T A C G T C T G A A C G T
A C G T A C G T A C G T A C G T A C G T C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G

GSC/MA0648.1/Jaspar

Match Rank:6
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:AACCCAAAGATTA--
-----NNGGATTAGN
 C T G A C G T A A G T C A G T C G T A C C G T A C T G A C G T A C T A G C G T A A C G T A C G T C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C

PB0141.1_Isgf3g_2/Jaspar

Match Rank:7
Score:0.55
Offset:2
Orientation:forward strand
Alignment:AACCCAAAGATTA---
--GCAAAACATTACTA
 C T G A C G T A A G T C A G T C G T A C C G T A C T G A C G T A C T A G C G T A A C G T A C G T C T G A A C G T A C G T A C G T
A C G T A C G T A C T G T A G C C G T A C G T A C G T A C T G A T A G C C G T A A C G T C A G T C G T A G T A C G A C T C T G A

GSC2/MA0891.1/Jaspar

Match Rank:8
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:AACCCAAAGATTA--
-----GNGGATTAGN
 C T G A C G T A A G T C A G T C G T A C C G T A C T G A C G T A C T A G C G T A A C G T A C G T C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:9
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:AACCCAAAGATTA--
-------GGATTAGC
 C T G A C G T A A G T C A G T C G T A C C G T A C T G A C G T A C T A G C G T A A C G T A C G T C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

Pitx1/MA0682.1/Jaspar

Match Rank:10
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:AACCCAAAGATTA-
------GGGATTAA
 C T G A C G T A A G T C A G T C G T A C C G T A C T G A C G T A C T A G C G T A A C G T A C G T C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A