Information for 11-TGGCAGCAGACAA (Motif 14)

A C G T C T A G A C T G A G T C C G T A C T A G A G T C C G T A A C T G C T G A A G T C C G T A C G T A
Reverse Opposite:
A C G T A C G T C T A G A G C T A G T C A C G T A C T G A G T C A C G T A C T G A G T C A G T C C G T A
p-value:1e-8
log p-value:-1.978e+01
Information Content per bp:1.939
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.4 +/- 30.5bp
Average Position of motif in Background62.5 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:TGGCAGCAGACAA
-----BCAGACWA
 A C G T C T A G A C T G A G T C C G T A C T A G A G T C C G T A A C T G C T G A A G T C C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

TGIF1/MA0796.1/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TGGCAGCAGACAA
TGACAGCTGTCA-
 A C G T C T A G A C T G A G T C C G T A C T A G A G T C C G T A A C T G C T G A A G T C C G T A C G T A
G C A T C A T G C G T A A T G C T C G A A T C G T G A C A G C T T C A G A G C T A G T C C G T A A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:3
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TGGCAGCAGACAA----
-CGAAGCACACAAAATA
 A C G T C T A G A C T G A G T C C G T A C T A G A G T C C G T A A C T G C T G A A G T C C G T A C G T A A C G T A C G T A C G T A C G T
A C G T G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:TGGCAGCAGACAA--
-----CCAGACRSVB
 A C G T C T A G A C T G A G T C C G T A C T A G A G T C C G T A A C T G C T G A A G T C C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

TGIF2/MA0797.1/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TGGCAGCAGACAA
TGACAGCTGTCA-
 A C G T C T A G A C T G A G T C C G T A C T A G A G T C C G T A A C T G C T G A A G T C C G T A C G T A
G C A T C T A G C T G A G A T C C T G A C A T G T A G C G A C T C T A G G A C T A T G C C G T A A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:TGGCAGCAGACAA
-----CCAGACAG
 A C G T C T A G A C T G A G T C C G T A C T A G A G T C C G T A A C T G C T G A A G T C C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TGGCAGCAGACAA-
TGGCACCATGCCAA
 A C G T C T A G A C T G A G T C C G T A C T A G A G T C C G T A A C T G C T G A A G T C C G T A C G T A A C G T
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

PKNOX1/MA0782.1/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGGCAGCAGACAA
TGACACCTGTCA-
 A C G T C T A G A C T G A G T C C G T A C T A G A G T C C G T A A C T G C T G A A G T C C G T A C G T A
G C A T A T C G C G T A A G T C T C G A A T G C G T A C G A C T C A T G G A C T A T G C C T G A A C G T

ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TGGCAGCAGACAA
AGAGRRACAGCWGAC--
 A C G T A C G T A C G T A C G T A C G T C T A G A C T G A G T C C G T A C T A G A G T C C G T A A C T G C T G A A G T C C G T A C G T A
T C G A C T A G C G T A C T A G C T G A T C A G C G T A A G T C C G T A T C A G T G A C G C A T A C T G C G T A A G T C A C G T A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TGGCAGCAGACAA-
NNNNAGCAGCTGCTGAN
 A C G T A C G T A C G T A C G T C T A G A C T G A G T C C G T A C T A G A G T C C G T A A C T G C T G A A G T C C G T A C G T A A C G T
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G