Information for 10-CATGCATGAATGC (Motif 12)

A T G C C G T A A C G T A C T G A G T C G T C A A C G T A C T G G C T A C G T A A G C T C T A G G A T C
Reverse Opposite:
C T A G A G T C C T G A G A C T C A G T G T A C C G T A A C G T A C T G A G T C C G T A A C G T A T C G
p-value:1e-8
log p-value:-2.046e+01
Information Content per bp:1.804
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif6.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.4 +/- 22.8bp
Average Position of motif in Background39.1 +/- 27.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--CATGCATGAATGC
GTCATGCHTGRCTGS
 A C G T A C G T A T G C C G T A A C G T A C T G A G T C G T C A A C G T A C T G G C T A C G T A A G C T C T A G G A T C
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---CATGCATGAATGC
NGTCACGCTTGGCTGC
 A C G T A C G T A C G T A T G C C G T A A C G T A C T G A G T C G T C A A C G T A C T G G C T A C G T A A G C T C T A G G A T C
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

PAX9/MA0781.1/Jaspar

Match Rank:3
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---CATGCATGAATGC-
CGTCACGCATGACTGCA
 A C G T A C G T A C G T A T G C C G T A A C G T A C T G A G T C G T C A A C G T A C T G G C T A C G T A A G C T C T A G G A T C A C G T
A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A

PAX1/MA0779.1/Jaspar

Match Rank:4
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---CATGCATGAATGC-
CGTCACGCATGACTGCA
 A C G T A C G T A C G T A T G C C G T A A C G T A C T G A G T C G T C A A C G T A C T G G C T A C G T A A G C T C T A G G A T C A C G T
A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

Pax6/MA0069.1/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CATGCATGAATGC
TTCACGCATGAGTT-
 A C G T A C G T A T G C C G T A A C G T A C T G A G T C G T C A A C G T A C T G G C T A C G T A A G C T C T A G G A T C
A C G T G A C T G A T C G T C A G A T C C A T G A T G C C G T A A G C T A T C G C T G A T A C G A G C T C A G T A C G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CATGCATGAATGC-
ACTATGAATGAATGAT
 A C G T A C G T A T G C C G T A A C G T A C T G A G T C G T C A A C G T A C T G G C T A C G T A A G C T C T A G G A T C A C G T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

PB0170.1_Sox17_2/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CATGCATGAATGC----
NTTNTATGAATGTGNNC
 A T G C C G T A A C G T A C T G A G T C G T C A A C G T A C T G G C T A C G T A A G C T C T A G G A T C A C G T A C G T A C G T A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

PB0178.1_Sox8_2/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CATGCATGAATGC
ACATTCATGACACG
 A C G T A T G C C G T A A C G T A C T G A G T C G T C A A C G T A C T G G C T A C G T A A G C T C T A G G A T C
C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

PH0148.1_Pou3f3/Jaspar

Match Rank:9
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----CATGCATGAATGC
TNNATTATGCATANNTT-
 A C G T A C G T A C G T A C G T A C G T A T G C C G T A A C G T A C T G A G T C G T C A A C G T A C T G G C T A C G T A A G C T C T A G G A T C
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CATGCATGAATGC
-ATGMATATDC--
 A T G C C G T A A C G T A C T G A G T C G T C A A C G T A C T G G C T A C G T A A G C T C T A G G A T C
A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T