Information for 14-TCTATCAAAGCAG (Motif 27)

A C G T G T A C A C G T C G T A G A C T A G T C C G T A C G T A C G T A A C T G A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A G T C C G A T A C G T A C G T A C T G C G T A A C G T C G T A A C T G C G T A
p-value:1e-8
log p-value:-1.983e+01
Information Content per bp:1.927
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.5 +/- 28.0bp
Average Position of motif in Background28.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0082.1_Tcf3_1/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TCTATCAAAGCAG--
TATAGATCAAAGGAAAA
 A C G T A C G T A C G T G T A C A C G T C G T A G A C T A G T C C G T A C G T A C G T A A C T G A G T C C G T A A C T G A C G T A C G T
G A C T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G C T A G C T A G C T A

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TCTATCAAAGCAG--
NNNAGATCAAAGGANNN
 A C G T A C G T A C G T G T A C A C G T C G T A G A C T A G T C C G T A C G T A C G T A A C T G A G T C C G T A A C T G A C G T A C G T
A C G T G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C T A G C A T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TCTATCAAAGCAG
-ACATCAAAGG--
 A C G T G T A C A C G T C G T A G A C T A G T C C G T A C G T A C G T A A C T G A G T C C G T A A C T G
A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

PB0083.1_Tcf7_1/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TCTATCAAAGCAG--
TATAGATCAAAGGAAAA
 A C G T A C G T A C G T G T A C A C G T C G T A G A C T A G T C C G T A C G T A C G T A A C T G A G T C C G T A A C T G A C G T A C G T
A C G T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C A T G C T A

PB0040.1_Lef1_1/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TCTATCAAAGCAG--
NANAGATCAAAGGGNNN
 A C G T A C G T A C G T G T A C A C G T C G T A G A C T A G T C C G T A C G T A C G T A A C T G A G T C C G T A A C T G A C G T A C G T
A C T G G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C A G G C T A G A C T G A C T

PBX1/MA0070.1/Jaspar

Match Rank:6
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---TCTATCAAAGCAG
CCATCAATCAAA----
 A C G T A C G T A C G T A C G T G T A C A C G T C G T A G A C T A G T C C G T A C G T A C G T A A C T G A G T C C G T A A C T G
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A A C G T A C G T A C G T A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:7
Score:0.58
Offset:3
Orientation:forward strand
Alignment:TCTATCAAAGCAG
---ATTAAA----
 A C G T G T A C A C G T C G T A G A C T A G T C C G T A C G T A C G T A A C T G A G T C C G T A A C T G
A C G T A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T A C G T A C G T

DMRT3/MA0610.1/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TCTATCAAAGCAG
AATGTATCAAT----
 A C G T A C G T A C G T G T A C A C G T C G T A G A C T A G T C C G T A C G T A C G T A A C T G A G T C C G T A A C T G
G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T A C G T A C G T A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TCTATCAAAGCAG
GNCTATAAAAGG--
 A C G T A C G T G T A C A C G T C G T A G A C T A G T C C G T A C G T A C G T A A C T G A G T C C G T A A C T G
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TCTATCAAAGCAG---
-GTATAAAAGGCGGGG
 A C G T G T A C A C G T C G T A G A C T A G T C C G T A C G T A C G T A A C T G A G T C C G T A A C T G A C G T A C G T A C G T
A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G