Information for 1-CWGCAGGGTCTCG (Motif 3)

A T G C G C T A A C T G A G T C C G T A A C T G T C A G A T C G A C G T A G T C A C G T A G T C A C T G
Reverse Opposite:
G T A C A C T G G T C A C T A G G T C A A T G C A G T C A G T C C G A T A C T G G T A C C G A T A T C G
p-value:1e-13
log p-value:-3.001e+01
Information Content per bp:1.825
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.10%
Number of Background Sequences with motif12.6
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets39.7 +/- 26.2bp
Average Position of motif in Background62.8 +/- 20.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CWGCAGGGTCTCG
DCHCAGCAGGRGGCC-
 A C G T A C G T A C G T A T G C G C T A A C T G A G T C C G T A A C T G T C A G A T C G A C G T A G T C A C G T A G T C A C T G
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CWGCAGGGTCTCG
CACAGCAGGGGG---
 A C G T A C G T A T G C G C T A A C T G A G T C C G T A A C T G T C A G A T C G A C G T A G T C A C G T A G T C A C T G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CWGCAGGGTCTCG
DCTCAGCAGG------
 A C G T A C G T A C G T A T G C G C T A A C T G A G T C C G T A A C T G T C A G A T C G A C G T A G T C A C G T A G T C A C T G
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CWGCAGGGTCTCG
GTCWGCTGTYYCTCT
 A C G T A C G T A T G C G C T A A C T G A G T C C G T A A C T G T C A G A T C G A C G T A G T C A C G T A G T C A C T G
C T A G A C G T A G T C C G T A A C T G A G T C G C A T A C T G G C A T A G T C G A C T G A T C G C A T A G T C A G C T

ZIC1/MA0696.1/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CWGCAGGGTCTCG
CACAGCGGGGGGTC-
 A C G T A C G T A T G C G C T A A C T G A G T C C G T A A C T G T C A G A T C G A C G T A G T C A C G T A G T C A C T G
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C A C G T

LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer

Match Rank:6
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CWGCAGGGTCTCG
--NRRGGGTCTT-
 A T G C G C T A A C T G A G T C C G T A A C T G T C A G A T C G A C G T A G T C A C G T A G T C A C T G
A C G T A C G T A C T G T C G A C T A G A C T G A C T G A C T G A C G T A G T C A C G T A G C T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CWGCAGGGTCTCG
NCGCAGCGGGGGGTC-
 A C G T A C G T A C G T A T G C G C T A A C T G A G T C C G T A A C T G T C A G A T C G A C G T A G T C A C G T A G T C A C T G
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CWGCAGGGTCTCG
NCNCAGCGGGGGGTC-
 A C G T A C G T A C G T A T G C G C T A A C T G A G T C C G T A A C T G T C A G A T C G A C G T A G T C A C G T A G T C A C T G
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CWGCAGGGTCTCG
ANCAGCTG-------
 A C G T A C G T A T G C G C T A A C T G A G T C C G T A A C T G T C A G A T C G A C G T A G T C A C G T A G T C A C T G
C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:10
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CWGCAGGGTCTCG
CCACACAGCAGGAGA---
 A C G T A C G T A C G T A C G T A C G T A T G C G C T A A C T G A G T C C G T A A C T G T C A G A T C G A C G T A G T C A C G T A G T C A C T G
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T