Information for 6-TTTWTTACAG (Motif 9)

A C G T A G C T C G A T C G T A A C G T A G C T T C G A A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A G C T C T G A G T C A G C A T C G T A C T G A C G T A
p-value:1e-10
log p-value:-2.526e+01
Information Content per bp:1.808
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.10%
Number of Background Sequences with motif116.8
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets44.3 +/- 29.7bp
Average Position of motif in Background51.7 +/- 31.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.71
Offset:-7
Orientation:forward strand
Alignment:-------TTTWTTACAG---
TTTTTTTTTTTTTTCAGGTT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C G A T C G T A A C G T A G C T T C G A A G T C C G T A A C T G A C G T A C G T A C G T
G A C T G A C T A G C T A G C T A G C T A G C T A G C T A G C T A G C T G A C T G A C T G A C T G A C T G A C T G A T C C G T A A C T G T C A G C G A T C G A T

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.70
Offset:-7
Orientation:forward strand
Alignment:-------TTTWTTACAG---
TTTTTTTTTTTTTTCAGGTT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C G A T C G T A A C G T A G C T T C G A A G T C C G T A A C T G A C G T A C G T A C G T
G A C T A G C T A G C T G A C T G A C T A G C T A G C T A G C T A G C T G A C T G A C T G A C T G A C T G A C T G A T C C G T A A C T G T C A G G C A T C G A T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:3
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--TTTWTTACAG
NTTTTATGAC--
 A C G T A C G T A C G T A G C T C G A T C G T A A C G T A G C T T C G A A G T C C G T A A C T G
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:4
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--TTTWTTACAG
NTTTTATTACN-
 A C G T A C G T A C G T A G C T C G A T C G T A A C G T A G C T T C G A A G T C C G T A A C T G
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C A C G T

Rhox11/MA0629.1/Jaspar

Match Rank:5
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TTTWTTACAG------
TCNNTTTACAGCGNNNT
 A C G T A C G T A G C T C G A T C G T A A C G T A G C T T C G A A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

PH0157.1_Rhox11_1/Jaspar

Match Rank:6
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TTTWTTACAG------
TCNNTTTACAGCGNNNT
 A C G T A C G T A G C T C G A T C G T A A C G T A G C T T C G A A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

PH0158.1_Rhox11_2/Jaspar

Match Rank:7
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TTTWTTACAG------
TCNCTTTACAGCGNNNT
 A C G T A C G T A G C T C G A T C G T A A C G T A G C T T C G A A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C G A T A G T C A T G C G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G G A T C C T A G C A G T G T A C A G T C C G A T

PH0046.1_Hoxa10/Jaspar

Match Rank:8
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----TTTWTTACAG-
TNAATTTTATTACCTN
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T C G A T C G T A A C G T A G C T T C G A A G T C C G T A A C T G A C G T
G C A T C A T G G T C A C G T A C G A T C G A T G C A T C G A T C G T A G A C T C A G T C T G A A G T C T G A C C A G T G T C A

Hoxd9/MA0913.1/Jaspar

Match Rank:9
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TTTWTTACAG
TTTTTATTGC--
 A C G T A C G T A C G T A G C T C G A T C G T A A C G T A G C T T C G A A G T C C G T A A C T G
C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:TTTWTTACAG-
-----CACAGN
 A C G T A G C T C G A T C G T A A C G T A G C T T C G A A G T C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C