Information for 10-TCCAAGGCAGCTC (Motif 20)

A C G T A G T C A G T C C G T A C G T A A C T G A C T G A G T C C T G A A C T G A G T C A C G T A G T C
Reverse Opposite:
A C T G C G T A A C T G A G T C A G C T A C T G A G T C A G T C C G A T C G A T A C T G A C T G C G T A
p-value:1e-8
log p-value:-1.927e+01
Information Content per bp:1.924
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.8 +/- 30.1bp
Average Position of motif in Background44.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1/MA0509.1/Jaspar

Match Rank:1
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---TCCAAGGCAGCTC
GTTGCCATGGCAAC--
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C T G A C T G A G T C C T G A A C T G A G T C A C G T A G T C
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TCCAAGGCAGCTC
TTGCCATGGCAACN-
 A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C T G A C T G A G T C C T G A A C T G A G T C A C G T A G T C
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TCCAAGGCAGCTC
TTGCCATGGCAACC-
 A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C T G A C T G A G T C C T G A A C T G A G T C A C G T A G T C
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C A C G T

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:4
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----TCCAAGGCAGCTC
KGTTGCCATGGCAAC--
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C T G A C T G A G T C C T G A A C T G A G T C A C G T A G T C
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C A C G T A C G T

Myog/MA0500.1/Jaspar

Match Rank:5
Score:0.54
Offset:5
Orientation:forward strand
Alignment:TCCAAGGCAGCTC---
-----GACAGCTGCAG
 A C G T A G T C A G T C C G T A C G T A A C T G A C T G A G T C C T G A A C T G A G T C A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G T C G A A G T C C G T A A C T G T A G C A C G T A C T G T A G C C T G A T A C G

Ascl2/MA0816.1/Jaspar

Match Rank:6
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:TCCAAGGCAGCTC--
-----AGCAGCTGCT
 A C G T A G T C A G T C C G T A C G T A A C T G A C T G A G T C C T G A A C T G A G T C A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A T C A G T G A C C G T A A C T G T A G C C G A T C A T G A G T C A G C T

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:7
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----TCCAAGGCAGCTC
CGGTTGCCATGGCAAC--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C G T A A C T G A C T G A G T C C T G A A C T G A G T C A C G T A G T C
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C A C G T A C G T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:8
Score:0.52
Offset:5
Orientation:forward strand
Alignment:TCCAAGGCAGCTC----
-----AGCAGCTGCTNN
 A C G T A G T C A G T C C G T A C G T A A C T G A C T G A G T C C T G A A C T G A G T C A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.52
Offset:8
Orientation:reverse strand
Alignment:TCCAAGGCAGCTC
--------NGCTN
 A C G T A G T C A G T C C G T A C G T A A C T G A C T G A G T C C T G A A C T G A G T C A C G T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:10
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:TCCAAGGCAGCTC---
------GCAGCTGTNN
 A C G T A G T C A G T C C G T A C G T A A C T G A C T G A G T C C T G A A C T G A G T C A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G A G T C C G T A A T C G T A G C A C G T A C T G A G C T A C T G G C A T