Information for 3-GCGGTGTCCAAAAGCC (Motif 4)

A C T G A G T C A C T G A T C G A C G T A C T G C G A T A G T C A G T C C G T A G T C A C G T A C G T A A C T G A G T C A G T C
Reverse Opposite:
A C T G A C T G A G T C A C G T A C G T A C G T A C G T T C A G A C T G C G T A A G T C G T C A A T G C A G T C A C T G G T A C
p-value:1e-13
log p-value:-3.081e+01
Information Content per bp:1.898
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.9 +/- 24.8bp
Average Position of motif in Background78.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MTF1/MA0863.1/Jaspar

Match Rank:1
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GCGGTGTCCAAAAGCC
GTGCCGTGTGCAAA----
 A C G T A C G T A C T G A G T C A C T G A T C G A C G T A C T G C G A T A G T C A G T C C G T A G T C A C G T A C G T A A C T G A G T C A G T C
C T A G A C G T C T A G G T A C G A T C A C T G A C G T A C T G G A C T A C T G A G T C C G T A T G C A G T C A A C G T A C G T A C G T A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:2
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GCGGTGTCCAAAAGCC-
--AGAGTCCAAAGTCCA
 A C T G A G T C A C T G A T C G A C G T A C T G C G A T A G T C A G T C C G T A G T C A C G T A C G T A A C T G A G T C A G T C A C G T
A C G T A C G T C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

PB0133.1_Hic1_2/Jaspar

Match Rank:3
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-GCGGTGTCCAAAAGCC
GGGTGTGCCCAAAAGG-
 A C G T A C T G A G T C A C T G A T C G A C G T A C T G C G A T A G T C A G T C C G T A G T C A C G T A C G T A A C T G A G T C A G T C
C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:4
Score:0.51
Offset:1
Orientation:forward strand
Alignment:GCGGTGTCCAAAAGCC-
-CANAGNNCAAAGTCCA
 A C T G A G T C A C T G A T C G A C G T A C T G C G A T A G T C A G T C C G T A G T C A C G T A C G T A A C T G A G T C A G T C A C G T
A C G T G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

PB0044.1_Mtf1_1/Jaspar

Match Rank:5
Score:0.49
Offset:-2
Orientation:forward strand
Alignment:--GCGGTGTCCAAAAGCC
GGGCCGTGTGCAAAAA--
 A C G T A C G T A C T G A G T C A C T G A T C G A C G T A C T G C G A T A G T C A G T C C G T A G T C A C G T A C G T A A C T G A G T C A G T C
C A T G A C T G C T A G G A T C G T A C C A T G C A G T A C T G G A C T C A T G G T A C C G T A T G C A G T C A C T G A G C A T A C G T A C G T

PB0150.1_Mybl1_2/Jaspar

Match Rank:6
Score:0.49
Offset:4
Orientation:forward strand
Alignment:GCGGTGTCCAAAAGCC---
----CGACCAACTGCCGTG
 A C T G A G T C A C T G A T C G A C G T A C T G C G A T A G T C A G T C C G T A G T C A C G T A C G T A A C T G A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C A T C G T G C A G A T C G A T C G C T A G T C A A G T C A G C T A C T G G A T C G T A C C T A G G C A T A C T G

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:7
Score:0.49
Offset:3
Orientation:reverse strand
Alignment:GCGGTGTCCAAAAGCC-
---NTGCCCANNGGTNA
 A C T G A G T C A C T G A T C G A C G T A C T G C G A T A G T C A G T C C G T A G T C A C G T A C G T A A C T G A G T C A G T C A C G T
A C G T A C G T A C G T T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A

PB0149.1_Myb_2/Jaspar

Match Rank:8
Score:0.48
Offset:4
Orientation:forward strand
Alignment:GCGGTGTCCAAAAGCC----
----CGACCAACTGCCATGC
 A C T G A G T C A C T G A T C G A C G T A C T G C G A T A G T C A G T C C G T A G T C A C G T A C G T A A C T G A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C C A T G G T C A A G T C G A T C C G T A G T C A A G T C A G C T T C A G G A T C G A T C C T G A A G C T A T C G A G T C

PB0025.1_Glis2_1/Jaspar

Match Rank:9
Score:0.48
Offset:-4
Orientation:reverse strand
Alignment:----GCGGTGTCCAAAAGCC
NTNTGGGGGGTCNNNA----
 A C G T A C G T A C G T A C G T A C T G A G T C A C T G A T C G A C G T A C T G C G A T A G T C A G T C C G T A G T C A C G T A C G T A A C T G A G T C A G T C
G T A C G A C T T C A G A C G T C T A G C T A G C A T G C A T G A C T G A C T G A C G T T G A C A T C G C G T A C G A T C T G A A C G T A C G T A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:10
Score:0.47
Offset:3
Orientation:reverse strand
Alignment:GCGGTGTCCAAAAGCC
---GNCTATAAAAGG-
 A C T G A G T C A C T G A T C G A C G T A C T G C G A T A G T C A G T C C G T A G T C A C G T A C G T A A C T G A G T C A G T C
A C G T A C G T A C G T A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T