Information for 10-CCTTACTAGT (Motif 21)

A G T C A G T C A C G T A C G T C G T A A G T C C G A T C G T A A T C G A C G T
Reverse Opposite:
C G T A A T G C A C G T C G T A A C T G A C G T G T C A C G T A C T A G A C T G
p-value:1e-5
log p-value:-1.163e+01
Information Content per bp:1.890
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif7.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets50.0 +/- 23.0bp
Average Position of motif in Background52.5 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.75
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HMBOX1/MA0895.1/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CCTTACTAGT
GTTAACTAGN
 A G T C A G T C A C G T A C G T C G T A A G T C C G A T C G T A A T C G A C G T
A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T

PH0040.1_Hmbox1/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CCTTACTAGT----
GANGTTAACTAGTTTNN
 A C G T A C G T A C G T A G T C A G T C A C G T A C G T C G T A A G T C C G A T C G T A A T C G A C G T A C G T A C G T A C G T A C G T
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CCTTACTAGT---
ACCGTGACTAATTNN
 A C G T A C G T A G T C A G T C A C G T A C G T C G T A A G T C C G A T C G T A A T C G A C G T A C G T A C G T A C G T
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

HOXC13/MA0907.1/Jaspar

Match Rank:4
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CCTTACTAGT
NTTTTACGAGN
 A C G T A G T C A G T C A C G T A C G T C G T A A G T C C G A T C G T A A T C G A C G T
C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C

PH0028.1_En1/Jaspar

Match Rank:5
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CCTTACTAGT----
GNATTAATTAGTTNNC
 A C G T A C G T A G T C A G T C A C G T A C G T C G T A A G T C C G A T C G T A A T C G A C G T A C G T A C G T A C G T A C G T
A C T G G A T C T G C A G A C T G A C T C G T A C G T A A G C T A G C T C T G A C T A G A C G T A C G T A G T C A T C G A G T C

PB0129.1_Glis2_2/Jaspar

Match Rank:6
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CCTTACTAGT---
TCTTTANTAATANN
 A C G T A G T C A G T C A C G T A C G T C G T A A G T C C G A T C G T A A T C G A C G T A C G T A C G T A C G T
A G C T A G T C C A G T G C A T C G A T C G T A C G A T G A C T G T C A C G T A G A C T T G C A G C A T C G A T

PH0048.1_Hoxa13/Jaspar

Match Rank:7
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CCTTACTAGT---
ANATTTTACGAGNNNN
 A C G T A C G T A C G T A G T C A G T C A C G T A C G T C G T A A G T C C G A T C G T A A T C G A C G T A C G T A C G T A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

PB0137.1_Irf3_2/Jaspar

Match Rank:8
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----CCTTACTAGT
NNGCACCTTTCTCC-
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T A C G T C G T A A G T C C G A T C G T A A T C G A C G T
A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C A C G T

PH0027.1_Emx2/Jaspar

Match Rank:9
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CCTTACTAGT----
ACCACTAATTAGTGGAC
 A C G T A C G T A C G T A G T C A G T C A C G T A C G T C G T A A G T C C G A T C G T A A T C G A C G T A C G T A C G T A C G T A C G T
G C T A T A G C T G A C T C G A A G T C G A C T G T C A G C T A C A G T A C G T C T G A T C A G A G C T A C T G T A C G G C T A A G T C

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CCTTACTAGT
NNACTTACCTN-
 A C G T A C G T A G T C A G T C A C G T A C G T C G T A A G T C C G A T C G T A A T C G A C G T
C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G A C G T