Information for 5-CAGCTTTAAA (Motif 6)

A G T C C G T A A C T G A G T C C G A T A C G T A G C T G C T A C G T A C G T A
Reverse Opposite:
C G A T C G A T C G A T C T G A C G T A C G T A A C T G A G T C G C A T A C T G
p-value:1e-10
log p-value:-2.409e+01
Information Content per bp:1.856
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.35%
Number of Background Sequences with motif41.5
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets41.3 +/- 26.6bp
Average Position of motif in Background57.1 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CAGCTTTAAA
CGGTTTCAAA
 A G T C C G T A A C T G A G T C C G A T A C G T A G C T G C T A C G T A C G T A
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CAGCTTTAAA--
---ATTTGAATT
 A G T C C G T A A C T G A G T C C G A T A C G T A G C T G C T A C G T A C G T A A C G T A C G T
A C G T A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CAGCTTTAAA
CAGCTGTT--
 A G T C C G T A A C T G A G T C C G A T A C G T A G C T G C T A C G T A C G T A
A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G C T A C G T A C G T

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CAGCTTTAAA
CCAGCTGTTN-
 A C G T A G T C C G T A A C T G A G T C C G A T A C G T A G C T G C T A C G T A C G T A
T G A C G T A C C T G A A C T G T G A C G C A T C A T G A C G T A C G T G C T A A C G T

Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CAGCTTTAAA
ACAGCTGTTV-
 A C G T A G T C C G T A A C T G A G T C C G A T A C G T A G C T G C T A C G T A C G T A
T C G A A G T C C G T A T A C G A T G C A C G T A C T G A G C T A G C T T G C A A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CAGCTTTAAA--
--CCTTTGATGT
 A G T C C G T A A C T G A G T C C G A T A C G T A G C T G C T A C G T A C G T A A C G T A C G T
A C G T A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T

PH0158.1_Rhox11_2/Jaspar

Match Rank:7
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CAGCTTTAAA----
AGGACGCTGTAAAGGGA
 A C G T A C G T A C G T A G T C C G T A A C T G A G T C C G A T A C G T A G C T G C T A C G T A C G T A A C G T A C G T A C G T A C G T
C G T A T C A G C A T G G T C A G A T C C T A G T A G C C A G T C T A G G A C T G C T A C G T A G C T A C T A G T A C G T C A G G C T A

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:8
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CAGCTTTAAA
NAHCAGCTGD---
 A C G T A C G T A C G T A G T C C G T A A C T G A G T C C G A T A C G T A G C T G C T A C G T A C G T A
G T C A T G C A G C T A A G T C C G T A A C T G T G A C G C A T T C A G C A G T A C G T A C G T A C G T

Rhox11/MA0629.1/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CAGCTTTAAA----
AAGACGCTGTAAAGCGA
 A C G T A C G T A C G T A G T C C G T A A C T G A G T C C G A T A C G T A G C T G C T A C G T A C G T A A C G T A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0157.1_Rhox11_1/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CAGCTTTAAA----
AAGACGCTGTAAAGCGA
 A C G T A C G T A C G T A G T C C G T A A C T G A G T C C G A T A C G T A G C T G C T A C G T A C G T A A C G T A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A