Information for 6-GGTCCGGCACTCC (Motif 11)

A T C G A T C G C G A T A T G C A G T C A C T G A C T G A G T C C T G A A G T C A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A A C T G A G C T A C T G A G T C A G T C A C T G A T C G C G T A A T G C A T G C
p-value:1e-9
log p-value:-2.076e+01
Information Content per bp:1.934
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.24%
Number of Background Sequences with motif5.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.8 +/- 27.9bp
Average Position of motif in Background67.3 +/- 19.5bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL011.1_XCPE1/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GGTCCGGCACTCC
GGTCCCGCCC---
 A T C G A T C G C G A T A T G C A G T C A C T G A C T G A G T C C T G A A G T C A C G T A G T C A G T C
A C T G A T C G A C G T A G T C A G T C A G T C C T A G A G T C A T G C A G T C A C G T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:2
Score:0.57
Offset:5
Orientation:forward strand
Alignment:GGTCCGGCACTCC--
-----RSCACTYRAG
 A T C G A T C G C G A T A T G C A G T C A C T G A C T G A G T C C T G A A G T C A C G T A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GGTCCGGCACTCC
TGTCTGDCACCT-
 A T C G A T C G C G A T A T G C A G T C A C T G A C T G A G T C C T G A A G T C A C G T A G T C A G T C
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.56
Offset:4
Orientation:forward strand
Alignment:GGTCCGGCACTCC-
----AASCACTCAA
 A T C G A T C G C G A T A T G C A G T C A C T G A C T G A G T C C T G A A G T C A C G T A G T C A G T C A C G T
A C G T A C G T A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:5
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:GGTCCGGCACTCC--
-----NSCACTYVAV
 A T C G A T C G C G A T A T G C A G T C A C T G A C T G A G T C C T G A A G T C A C G T A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:6
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:GGTCCGGCACTCC-
----MRSCACTYAA
 A T C G A T C G C G A T A T G C A G T C A C T G A C T G A G T C C T G A A G T C A C G T A G T C A G T C A C G T
A C G T A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

PB0133.1_Hic1_2/Jaspar

Match Rank:7
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GGTCCGGCACTCC-
NNNNTTGGGCACNNCN
 A C G T A C G T A T C G A T C G C G A T A T G C A G T C A C T G A C T G A G T C C T G A A G T C A C G T A G T C A G T C A C G T
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:8
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GGTCCGGCACTCC--
----AGCCACTCAAG
 A T C G A T C G C G A T A T G C A G T C A C T G A C T G A G T C C T G A A G T C A C G T A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

TEAD3/MA0808.1/Jaspar

Match Rank:9
Score:0.53
Offset:6
Orientation:forward strand
Alignment:GGTCCGGCACTCC-
------ACATTCCA
 A T C G A T C G C G A T A T G C A G T C A C T G A C T G A G T C C T G A A G T C A C G T A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A T G A C C G T A A C G T C G A T A G T C A G T C C G T A

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:10
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:GGTCCGGCACTCC--
-----GCCMCRCCCH
 A T C G A T C G C G A T A T G C A G T C A C T G A C T G A G T C C T G A A G T C A C G T A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G G T A C G A T C G T C A G A T C C T G A A G T C A G T C A G T C G C A T