Information for 3-CACACAGGGGAGA (Motif 5)

A T G C C G T A A G T C G T C A A G T C C G T A A C T G C T A G A T C G A T C G C T G A C A T G C G T A
Reverse Opposite:
A C G T G T A C A G C T A T G C A T G C A G T C A G T C A C G T A C T G A C G T A C T G A C G T A T C G
p-value:1e-12
log p-value:-2.871e+01
Information Content per bp:1.840
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.21%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets33.4 +/- 14.0bp
Average Position of motif in Background20.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CACACAGGGGAGA
--CACAGN-----
 A T G C C G T A A G T C G T C A A G T C C G T A A C T G C T A G A T C G A T C G C T G A C A T G C G T A
A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CACACAGGGGAGA
GTCCCCAGGGGA--
 A C G T A T G C C G T A A G T C G T C A A G T C C G T A A C T G C T A G A T C G A T C G C T G A C A T G C G T A
C A T G A C G T A G T C G A T C G A T C G A T C G C T A C T A G C T A G C T A G T C A G T C G A A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CACACAGGGGAGA
AACAAAGG-----
 A T G C C G T A A G T C G T C A A G T C C G T A A C T G C T A G A T C G A T C G C T G A C A T G C G T A
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T

PB0128.1_Gcm1_2/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CACACAGGGGAGA--
TGCGCATAGGGGAGGAG
 A C G T A C G T A T G C C G T A A G T C G T C A A G T C C G T A A C T G C T A G A T C G A T C G C T G A C A T G C G T A A C G T A C G T
C G A T C A T G A T G C T A C G G T A C T C G A A G C T T C G A C A T G A C T G A C T G A C T G T C G A A T C G T C A G G T C A A C T G

ZEB1/MA0103.2/Jaspar

Match Rank:5
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CACACAGGGGAGA
----CAGGTGAGG
 A T G C C G T A A G T C G T C A A G T C C G T A A C T G C T A G A T C G A T C G C T G A C A T G C G T A
A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C T G A C G T C T A G G C T A C T A G A C T G

PB0102.1_Zic2_1/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CACACAGGGGAGA
ACCCCCCCGGGGGGN
 A C G T A C G T A T G C C G T A A G T C G T C A A G T C C G T A A C T G C T A G A T C G A T C G C T G A C A T G C G T A
T G C A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G A T C G A C T G C A T G C A T G C A T G T A C G

PB0130.1_Gm397_2/Jaspar

Match Rank:7
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----CACACAGGGGAGA
AGCGGCACACACGCAA--
 A C G T A C G T A C G T A C G T A C G T A T G C C G T A A G T C G T C A A G T C C G T A A C T G C T A G A T C G A T C G C T G A C A T G C G T A
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A A C G T A C G T

PB0103.1_Zic3_1/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CACACAGGGGAGA
NCCCCCCCGGGGGGN
 A C G T A C G T A T G C C G T A A G T C G T C A A G T C C G T A A C T G C T A G A T C G A T C G C T G A C A T G C G T A
T C G A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G T A C G A C T G C A T G C A T G C A T G T A C G

Znf423/MA0116.1/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CACACAGGGGAGA
GGCACCCAGGGGTGC
 A C G T A C G T A T G C C G T A A G T C G T C A A G T C C G T A A C T G C T A G A T C G A T C G C T G A C A T G C G T A
T C A G A T C G G T A C G T C A A G T C A G T C G A T C C G T A C T A G A C T G A C T G A C T G A C G T A C T G G T A C

T/MA0009.2/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CACACAGGGGAGA
TCACACCTAGGTGTGA
 A C G T A C G T A C G T A T G C C G T A A G T C G T C A A G T C C G T A A C T G C T A G A T C G A T C G C T G A C A T G C G T A
G A C T T G A C C T G A A G T C C T G A G A T C T G A C G C A T C T G A A C T G C T A G A G C T C T A G G A C T A C T G C T G A