Information for 2-GRAGAGATCA (Motif 19)

C A T G C T G A C T G A C T A G C G T A T C A G C T G A A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A G C T A G T C G A C T A G T C A G C T A G C T G T A C
p-value:1e-9
log p-value:-2.168e+01
Information Content per bp:1.770
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif5.33%
Number of Background Sequences with motif488.2
Percentage of Background Sequences with motif0.99%
Average Position of motif in Targets50.9 +/- 24.6bp
Average Position of motif in Background52.3 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.32
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0037.1_Hdx/Jaspar

Match Rank:1
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--GRAGAGATCA-----
AAGGCGAAATCATCGCA
 A C G T A C G T C A T G C T G A C T G A C T A G C G T A T C A G C T G A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

PB0126.1_Gata5_2/Jaspar

Match Rank:2
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---GRAGAGATCA----
GACAGAGATATCAGTGT
 A C G T A C G T A C G T C A T G C T G A C T G A C T A G C G T A T C A G C T G A A C G T A G T C C G T A A C G T A C G T A C G T A C G T
T C A G T G C A A G T C G T C A C T A G G T C A C A T G T C G A C A G T G T C A C A G T G A T C C G T A C T A G G A C T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:3
Score:0.70
Offset:2
Orientation:forward strand
Alignment:GRAGAGATCA
--AGRGGTCA
 C A T G C T G A C T G A C T A G C G T A T C A G C T G A A C G T A G T C C G T A
A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A

Tcf7/MA0769.1/Jaspar

Match Rank:4
Score:0.67
Offset:2
Orientation:forward strand
Alignment:GRAGAGATCA----
--AAAGATCAAAGG
 C A T G C T G A C T G A C T A G C G T A T C A G C T G A A C G T A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G

PH0161.1_Six1/Jaspar

Match Rank:5
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GRAGAGATCA-----
GATGGGGTATCATTTTT
 A C G T A C G T C A T G C T G A C T G A C T A G C G T A T C A G C T G A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
C T A G G C T A C A G T T C A G C T A G A T C G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C A G T G C A T A C G T C A G T

LEF1/MA0768.1/Jaspar

Match Rank:6
Score:0.67
Offset:2
Orientation:forward strand
Alignment:GRAGAGATCA-------
--AAAGATCAAAGGGTT
 C A T G C T G A C T G A C T A G C G T A T C A G C T G A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T C G A C T G A C T G A T A C G C G T A G C A T T A G C C G T A C T G A C T G A T C A G T C A G T C A G C G A T G C A T

PB0118.1_Esrra_2/Jaspar

Match Rank:7
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GRAGAGATCA-----
GGCGAGGGGTCAAGGGC
 A C G T A C G T C A T G C T G A C T G A C T A G C G T A T C A G C T G A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GRAGAGATCA-
NGATGACGTCAT
 A C G T C A T G C T G A C T G A C T A G C G T A T C A G C T G A A C G T A G T C C G T A A C G T
C T A G T C A G T C G A C G A T C A T G C T G A A G T C T C A G G A C T T G A C C G T A A G C T

PH0166.1_Six6_2/Jaspar

Match Rank:9
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GRAGAGATCA-----
AATAGGGTATCAATATT
 A C G T A C G T C A T G C T G A C T G A C T A G C G T A T C A G C T G A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
C T G A C G T A C G A T T C G A C T A G C A T G T C A G C A G T C T G A A C G T G A T C G C T A G C T A G A C T G C T A G A C T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:10
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GRAGAGATCA-
---AAGGTCAC
 C A T G C T G A C T G A C T A G C G T A T C A G C T G A A C G T A G T C C G T A A C G T
A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C