Information for 7-AAGTATWTTTTAC (Motif 12)

C G T A C G T A C A T G C G A T C T G A G A C T C G A T G A C T A C G T A C G T A C G T C T G A A G T C
Reverse Opposite:
C T A G A G C T G T C A C G T A C G T A C G T A G C T A C G T A G A C T C G T A G T A C G A C T C G A T
p-value:1e-10
log p-value:-2.366e+01
Information Content per bp:1.718
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif2.18%
Number of Background Sequences with motif37.7
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets62.0 +/- 26.1bp
Average Position of motif in Background45.1 +/- 23.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:1
Score:0.68
Offset:5
Orientation:reverse strand
Alignment:AAGTATWTTTTAC----
-----DGWTTTATGRCN
 C G T A C G T A C A T G C G A T C T G A G A C T C G A T G A C T A C G T A C G T A C G T C T G A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

PH0075.1_Hoxd10/Jaspar

Match Rank:2
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:AAGTATWTTTTAC------
--NTNAATTTTATTGNATT
 C G T A C G T A C A T G C G A T C T G A G A C T C G A T G A C T A C G T A C G T A C G T C T G A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T

HOXD11/MA0908.1/Jaspar

Match Rank:3
Score:0.64
Offset:6
Orientation:reverse strand
Alignment:AAGTATWTTTTAC---
------NTTTTACGAC
 C G T A C G T A C A T G C G A T C T G A G A C T C G A T G A C T A C G T A C G T A C G T C T G A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T C G A T C G A T C G A T C G A T C G T A A G T C C T A G C G T A A G T C

HOXC12/MA0906.1/Jaspar

Match Rank:4
Score:0.64
Offset:6
Orientation:reverse strand
Alignment:AAGTATWTTTTAC----
------NTTTTACGACC
 C G T A C G T A C A T G C G A T C T G A G A C T C G A T G A C T A C G T A C G T A C G T C T G A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A G T C G A T G C A T C G A T T C G A A G T C C A T G C T G A A G T C G A T C

FOXO3/MA0157.2/Jaspar

Match Rank:5
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:AAGTATWTTTTAC
-----TTGTTTAC
 C G T A C G T A C A T G C G A T C T G A G A C T C G A T G A C T A C G T A C G T A C G T C T G A A G T C
A C G T A C G T A C G T A C G T A C G T G C A T A C G T C A T G A C G T A C G T A C G T G T C A A G T C

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.63
Offset:7
Orientation:reverse strand
Alignment:AAGTATWTTTTAC----
-------TTTTATTRGN
 C G T A C G T A C A T G C G A T C T G A G A C T C G A T G A C T A C G T A C G T A C G T C T G A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

Foxq1/MA0040.1/Jaspar

Match Rank:7
Score:0.63
Offset:3
Orientation:forward strand
Alignment:AAGTATWTTTTAC-
---TATTGTTTATT
 C G T A C G T A C A T G C G A T C T G A G A C T C G A T G A C T A C G T A C G T A C G T C T G A A G T C A C G T
A C G T A C G T A C G T G A C T C T G A G C A T C G A T A C T G A C G T A C G T A C G T C T G A A C G T C G A T

PB0015.1_Foxa2_1/Jaspar

Match Rank:8
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:AAGTATWTTTTAC-----
-NNNTTTGTTTACTTTTN
 C G T A C G T A C A T G C G A T C T G A G A C T C G A T G A C T A C G T A C G T A C G T C T G A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T T A C G G A C T A T G C C G A T C G A T C G A T C T A G C G A T C A G T C A G T C T G A A G T C G C A T G C A T C G A T C G A T C G A T

HOXD12/MA0873.1/Jaspar

Match Rank:9
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:AAGTATWTTTTAC----
------NTTTTACGACT
 C G T A C G T A C A T G C G A T C T G A G A C T C G A T G A C T A C G T A C G T A C G T C T G A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A G T C G A T G C A T A G C T G C A T C T G A A G T C A T C G T C G A A G T C A G C T

PH0048.1_Hoxa13/Jaspar

Match Rank:10
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:AAGTATWTTTTAC-------
----ANATTTTACGAGNNNN
 C G T A C G T A C A T G C G A T C T G A G A C T C G A T G A C T A C G T A C G T A C G T C T G A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T