Information for 22-TAAHAATWACWGC (Motif 43)

C G A T G C T A C G T A G T C A C T G A G C T A A G C T C G T A G T C A A G T C C G T A T C A G G A T C
Reverse Opposite:
C T A G A G T C G C A T C T A G A C G T G C A T T C G A C G A T G A C T C A G T A C G T C G A T G C T A
p-value:1e-5
log p-value:-1.315e+01
Information Content per bp:1.615
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.87%
Number of Background Sequences with motif188.3
Percentage of Background Sequences with motif0.38%
Average Position of motif in Targets52.0 +/- 25.8bp
Average Position of motif in Background52.8 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0172.1_Sox1_2/Jaspar

Match Rank:1
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---TAAHAATWACWGC
NNNTAACAATTATAN-
 A C G T A C G T A C G T C G A T G C T A C G T A G T C A C T G A G C T A A G C T C G T A G T C A A G T C C G T A T C A G G A T C
A T G C T C A G G T A C A C G T T G C A T G C A A T G C C T G A C T G A G A C T C G A T C T G A G A C T C T G A C A T G A C G T

PB0122.1_Foxk1_2/Jaspar

Match Rank:2
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-TAAHAATWACWGC-
CAAACAACAACACCT
 A C G T C G A T G C T A C G T A G T C A C T G A G C T A A G C T C G T A G T C A A G T C C G T A T C A G G A T C A C G T
G T A C G C T A G T C A C T G A G A T C T G C A T C G A A G T C T C G A C G T A G A T C C G T A G A T C G T A C G A C T

Sox5/MA0087.1/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TAAHAATWACWGC
NAACAAT------
 C G A T G C T A C G T A G T C A C T G A G C T A A G C T C G T A G T C A A G T C C G T A T C A G G A T C
G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SRY/MA0084.1/Jaspar

Match Rank:4
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TAAHAATWACWGC
GTAAACAAT------
 A C G T A C G T C G A T G C T A C G T A G T C A C T G A G C T A A G C T C G T A G T C A A G T C C G T A T C A G G A T C
A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

PB0062.1_Sox12_1/Jaspar

Match Rank:5
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----TAAHAATWACWGC
NTTNAGAACAATTA----
 A C G T A C G T A C G T A C G T A C G T C G A T G C T A C G T A G T C A C T G A G C T A A G C T C G T A G T C A A G T C C G T A T C A G G A T C
C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A A C G T A C G T A C G T A C G T

PB0175.1_Sox4_2/Jaspar

Match Rank:6
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----TAAHAATWACWGC
TNCNNAACAATTTTTNC
 A C G T A C G T A C G T A C G T C G A T G C T A C G T A G T C A C T G A G C T A A G C T C G T A G T C A A G T C C G T A T C A G G A T C
G A C T G A C T G A T C A T G C G A C T C T G A C G T A A G T C C G T A C T G A G A C T G A C T G A C T G A C T C G A T A G T C A T G C

PB0165.1_Sox11_2/Jaspar

Match Rank:7
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----TAAHAATWACWGC
NNCNNAACAATTNT---
 A C G T A C G T A C G T A C G T C G A T G C T A C G T A G T C A C T G A G C T A A G C T C G T A G T C A A G T C C G T A T C A G G A T C
G C A T G A C T A G T C G T C A C G A T C T G A C G T A A G T C C G T A T C G A A G C T G A C T G A C T G C A T A C G T A C G T A C G T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:8
Score:0.64
Offset:3
Orientation:forward strand
Alignment:TAAHAATWACWGC
---AAATCACTGC
 C G A T G C T A C G T A G T C A C T G A G C T A A G C T C G T A G T C A A G T C C G T A T C A G G A T C
A C G T A C G T A C G T T G C A C G T A G T C A A G C T A G T C G C T A T A G C C G A T C T A G G A T C

PB0067.1_Sox18_1/Jaspar

Match Rank:9
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----TAAHAATWACWGC
NNTNANAACAATTNNA--
 A C G T A C G T A C G T A C G T A C G T C G A T G C T A C G T A G T C A C T G A G C T A A G C T C G T A G T C A A G T C C G T A T C A G G A T C
C G A T C A G T G C A T C A G T C G T A T C A G C G T A G C T A A G T C G C T A C G T A C G A T C A G T T C A G C G T A T C G A A C G T A C G T

Gfi1b/MA0483.1/Jaspar

Match Rank:10
Score:0.64
Offset:3
Orientation:forward strand
Alignment:TAAHAATWACWGC-
---AAATCACAGCA
 C G A T G C T A C G T A G T C A C T G A G C T A A G C T C G T A G T C A A G T C C G T A T C A G G A T C A C G T
A C G T A C G T A C G T T G C A C G T A C T G A A G C T A G T C G C T A T A G C C G T A C T A G G A T C G C T A