Information for 14-RKRAAAVVCC (Motif 41)

C T G A A C G T C T A G G T C A G T C A G T C A T A C G T G C A T A G C A G T C
Reverse Opposite:
C T A G A T C G A C G T A T G C A C G T C A G T A C G T G A T C T G C A G A C T
p-value:1e-6
log p-value:-1.389e+01
Information Content per bp:1.515
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.00%
Number of Background Sequences with motif203.6
Percentage of Background Sequences with motif0.42%
Average Position of motif in Targets50.5 +/- 29.0bp
Average Position of motif in Background50.8 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)1.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REL/MA0101.1/Jaspar

Match Rank:1
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:RKRAAAVVCC-
-GGAAANCCCC
 C T G A A C G T C T A G G T C A G T C A G T C A T A C G T G C A T A G C A G T C A C G T
A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-RKRAAAVVCC
ACTGAAACCA-
 A C G T C T G A A C G T C T A G G T C A G T C A G T C A T A C G T G C A T A G C A G T C
G C T A T A G C A G C T A T C G G T C A C G T A G C T A A T G C G A T C C T G A A C G T

RELA/MA0107.1/Jaspar

Match Rank:3
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:RKRAAAVVCC-
-GGAAATTCCC
 C T G A A C G T C T A G G T C A G T C A G T C A T A C G T G C A T A G C A G T C A C G T
A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

MF0003.1_REL_class/Jaspar

Match Rank:4
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:RKRAAAVVCC-
-GGAAATCCCC
 C T G A A C G T C T A G G T C A G T C A G T C A T A C G T G C A T A G C A G T C A C G T
A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:forward strand
Alignment:RKRAAAVVCC-
-GGAAATTCCC
 C T G A A C G T C T A G G T C A G T C A G T C A T A C G T G C A T A G C A G T C A C G T
A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:RKRAAAVVCC--
GGGAAATCCCCN
 C T G A A C G T C T A G G T C A G T C A G T C A T A C G T G C A T A G C A G T C A C G T A C G T
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----RKRAAAVVCC
NCYAATAAAA----
 A C G T A C G T A C G T A C G T C T G A A C G T C T A G G T C A G T C A G T C A T A C G T G C A T A G C A G T C
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T

PH0162.1_Six2/Jaspar

Match Rank:8
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----RKRAAAVVCC---
ANANGTGATACCCCATT
 A C G T A C G T A C G T A C G T C T G A A C G T C T A G G T C A G T C A G T C A T A C G T G C A T A G C A G T C A C G T A C G T A C G T
G T C A C T G A C G T A G T A C C T A G A G C T C A T G C G T A A G C T G T C A A G T C T G A C A G T C A G T C G T C A C G A T G A C T

NFATC2/MA0152.1/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:RKRAAAVVCC
TGGAAAA---
 C T G A A C G T C T A G G T C A G T C A G T C A T A C G T G C A T A G C A G T C
C G A T A C T G A C T G C G T A C G T A T C G A G C T A A C G T A C G T A C G T

PH0161.1_Six1/Jaspar

Match Rank:10
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----RKRAAAVVCC---
ANNNATGATACCCCATC
 A C G T A C G T A C G T A C G T C T G A A C G T C T A G G T C A G T C A G T C A T A C G T G C A T A G C A G T C A C G T A C G T A C G T
G T C A T G C A C G T A G T C A C T G A G A C T C A T G C G T A A G C T G T C A A G T C A T G C A G T C A G T C G C T A C G A T G A T C