Information for 9-GAACATTGAA (Motif 31)

A C T G C G T A C T G A A G T C C G T A C G A T A C G T A C T G G T C A C T G A
Reverse Opposite:
G A C T A C G T A G T C C G T A C G T A A C G T C T A G A G C T G C A T G T A C
p-value:1e-7
log p-value:-1.700e+01
Information Content per bp:1.815
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.34%
Number of Background Sequences with motif59.2
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets51.4 +/- 28.1bp
Average Position of motif in Background49.9 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0070.1_Sox30_1/Jaspar

Match Rank:1
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---GAACATTGAA---
AATGAACAATGGAATT
 A C G T A C G T A C G T A C T G C G T A C T G A A G T C C G T A C G A T A C G T A C T G G T C A C T G A A C G T A C G T A C G T
C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GAACATTGAA
GAACAATGGN
 A C T G C G T A C T G A A G T C C G T A C G A T A C G T A C T G G T C A C T G A
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GAACATTGAA
VRAACAATGG-
 A C G T A C T G C G T A C T G A A G T C C G T A C G A T A C G T A C T G G T C A C T G A
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T

PB0072.1_Sox5_1/Jaspar

Match Rank:4
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GAACATTGAA--
TTTAGAACAATAAAAT
 A C G T A C G T A C G T A C G T A C T G C G T A C T G A A G T C C G T A C G A T A C G T A C T G G T C A C T G A A C G T A C G T
C G A T G C A T C A G T C T G A C T A G T C G A C G T A A G T C C G T A C G T A G C A T C G T A C T G A C G T A G C T A C G A T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:5
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GAACATTGAA
VRRACAAWGG-
 A C G T A C T G C G T A C T G A A G T C C G T A C G A T A C G T A C T G G T C A C T G A
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:6
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GAACATTGAA
GGAACAAAGR-
 A C G T A C T G C G T A C T G A A G T C C G T A C G A T A C G T A C T G G T C A C T G A
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T

Sox6/MA0515.1/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GAACATTGAA
AAAACAATGG-
 A C G T A C T G C G T A C T G A A G T C C G T A C G A T A C G T A C T G G T C A C T G A
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T

Sox17/MA0078.1/Jaspar

Match Rank:8
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GAACATTGAA
-GACAATGNN
 A C T G C G T A C T G A A G T C C G T A C G A T A C G T A C T G G T C A C T G A
A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

PB0005.1_Bbx_1/Jaspar

Match Rank:9
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GAACATTGAA---
NANTTCATTGAATTA
 A C G T A C G T A C T G C G T A C T G A A G T C C G T A C G A T A C G T A C T G G T C A C T G A A C G T A C G T A C G T
G A T C C G T A T A G C C G A T C G A T T G A C G C T A G C A T C G A T A C T G C G T A G C T A G A C T C G A T C G T A

PB0062.1_Sox12_1/Jaspar

Match Rank:10
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----GAACATTGAA
NTTNAGAACAATTA-
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A C T G A A G T C C G T A C G A T A C G T A C T G G T C A C T G A
C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A A C G T