Information for 5-TTCTGTCTGCTTGCCA (Motif 10)

A C G T A C G T A G T C A C G T A C T G A C G T A G T C A C G T A C T G A G T C A C G T A C G T A C T G A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G A C T G A G T C C G T A C G T A A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C T G C G T A C G T A
p-value:1e-7
log p-value:-1.675e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.48%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets33.2 +/- 18.8bp
Average Position of motif in Background67.0 +/- 15.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.64
Offset:2
Orientation:forward strand
Alignment:TTCTGTCTGCTTGCCA
--CTGGCAGNCTGCCA
 A C G T A C G T A G T C A C G T A C T G A C G T A G T C A C G T A C T G A G T C A C G T A C G T A C T G A G T C A G T C C G T A
A C G T A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TTCTGTCTGCTTGCCA
--CTGTCTGG------
 A C G T A C G T A G T C A C G T A C T G A C G T A G T C A C G T A C T G A G T C A C G T A C G T A C T G A G T C A G T C C G T A
A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:TTCTGTCTGCTTGCCA--
--TTGGCANNNTGCCAAG
 A C G T A C G T A G T C A C G T A C T G A C G T A G T C A C G T A C T G A G T C A C G T A C G T A C T G A G T C A G T C C G T A A C G T A C G T
A C G T A C G T G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TTCTGTCTGCTTGCCA
VBSYGTCTGG------
 A C G T A C G T A G T C A C G T A C T G A C G T A G T C A C G T A C T G A G T C A C G T A C G T A C T G A G T C A G T C C G T A
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:5
Score:0.56
Offset:3
Orientation:forward strand
Alignment:TTCTGTCTGCTTGCCA-
---TGGCACCATGCCAA
 A C G T A C G T A G T C A C G T A C T G A C G T A G T C A C G T A C T G A G T C A C G T A C G T A C T G A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.55
Offset:9
Orientation:reverse strand
Alignment:TTCTGTCTGCTTGCCA-
---------CTTGGCAA
 A C G T A C G T A G T C A C G T A C T G A C G T A G T C A C G T A C T G A G T C A C G T A C G T A C T G A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.54
Offset:2
Orientation:forward strand
Alignment:TTCTGTCTGCTTGCCA
--TWGTCTGV------
 A C G T A C G T A G T C A C G T A C T G A C G T A G T C A C G T A C T G A G T C A C G T A C G T A C T G A G T C A G T C C G T A
A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--TTCTGTCTGCTTGCCA
NNTNNTGTCTGGNNTNG-
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C G T A G T C A C G T A C T G A G T C A C G T A C G T A C T G A G T C A G T C C G T A
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G A C G T

RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TTCTGTCTGCTTGCCA
CAKCTGKYCYYTTYCCC
 A C G T A C G T A C G T A G T C A C G T A C T G A C G T A G T C A C G T A C T G A G T C A C G T A C G T A C T G A G T C A G T C C G T A
T G A C G C T A A C G T T G A C C G A T A C T G A C T G A G T C A G T C A G T C A G C T A G C T A G C T A G C T G A T C T G A C G T A C

NFIX/MA0671.1/Jaspar

Match Rank:10
Score:0.52
Offset:9
Orientation:forward strand
Alignment:TTCTGTCTGCTTGCCA--
---------CGTGCCAAG
 A C G T A C G T A G T C A C G T A C T G A C G T A G T C A C G T A C T G A G T C A C G T A C G T A C T G A G T C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G