Information for 4-CTCTCACGTCTGC (Motif 6)

A G T C A C G T A G T C G A C T A T G C C G T A G T A C A C T G A C G T A G T C A C G T A C T G A G T C
Reverse Opposite:
A C T G A G T C C G T A A C T G C G T A A G T C A C T G A C G T A T C G C T G A A C T G C G T A A C T G
p-value:1e-10
log p-value:-2.469e+01
Information Content per bp:1.934
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.0 +/- 28.5bp
Average Position of motif in Background30.7 +/- 12.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.64
Offset:3
Orientation:forward strand
Alignment:CTCTCACGTCTGC
---VBSYGTCTGG
 A G T C A C G T A G T C G A C T A T G C C G T A G T A C A C T G A C G T A G T C A C G T A C T G A G T C
A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CTCTCACGTCTGC-----
-NNTNNTGTCTGGNNTNG
 A G T C A C G T A G T C G A C T A T G C C G T A G T A C A C T G A C G T A G T C A C G T A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.59
Offset:5
Orientation:forward strand
Alignment:CTCTCACGTCTGC
-----CTGTCTGG
 A G T C A C G T A G T C G A C T A T G C C G T A G T A C A C T G A C G T A G T C A C G T A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:4
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CTCTCACGTCTGC
---GCACGTACCC
 A G T C A C G T A G T C G A C T A T G C C G T A G T A C A C T G A C G T A G T C A C G T A C T G A G T C
A C G T A C G T A C G T C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

HINFP/MA0131.2/Jaspar

Match Rank:5
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CTCTCACGTCTGC--
---CAACGTCCGCGG
 A G T C A C G T A G T C G A C T A T G C C G T A G T A C A C T G A C G T A G T C A C G T A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A T G C T G C A T C G A A T G C A T C G A C G T A T G C A G T C A T C G A T G C C A T G A C T G

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:6
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CTCTCACGTCTGC
---GCACGTAY--
 A G T C A C G T A G T C G A C T A T G C C G T A G T A C A C T G A C G T A G T C A C G T A C T G A G T C
A C G T A C G T A C G T C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T A C G T A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:7
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CTCTCACGTCTGC
---GCACGTNC--
 A G T C A C G T A G T C G A C T A T G C C G T A G T A C A C T G A C G T A G T C A C G T A C T G A G T C
A C G T A C G T A C G T A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C A C G T A C G T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:8
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CTCTCACGTCTGC
--BGCACGTA---
 A G T C A C G T A G T C G A C T A T G C C G T A G T A C A C T G A C G T A G T C A C G T A C T G A G T C
A C G T A C G T A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A A C G T A C G T A C G T

CRE(bZIP)/Promoter/Homer

Match Rank:9
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CTCTCACGTCTGC-
--GTGACGTCACCG
 A G T C A C G T A G T C G A C T A T G C C G T A G T A C A C T G A C G T A G T C A C G T A C T G A G T C A C G T
A C G T A C G T T A C G A G C T A T C G C T G A A G T C C T A G A G C T A T G C C T G A A T G C T A G C T A C G

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:10
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---CTCTCACGTCTGC
AGCCACTCAAG-----
 A C G T A C G T A C G T A G T C A C G T A G T C G A C T A T G C C G T A G T A C A C T G A C G T A G T C A C G T A C T G A G T C
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T