Information for 4-GAGGATCCGA (Motif 16)

A C T G C G T A A C T G A C T G T C G A A C G T A G T C G T A C C T A G C G T A
Reverse Opposite:
G C A T G A T C A C T G A C T G G T C A A G C T G T A C A G T C G C A T A G T C
p-value:1e-8
log p-value:-2.050e+01
Information Content per bp:1.840
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.49%
Number of Background Sequences with motif72.0
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets34.3 +/- 23.8bp
Average Position of motif in Background46.4 +/- 24.8bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GAGGATCCGA
---GCTCCG-
 A C T G C G T A A C T G A C T G T C G A A C G T A G T C G T A C C T A G C G T A
A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T

ZNF354C/MA0130.1/Jaspar

Match Rank:2
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GAGGATCCGA
GTGGAT----
 A C T G C G T A A C T G A C T G T C G A A C G T A G T C G T A C C T A G C G T A
A T C G A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T

MZF1/MA0056.1/Jaspar

Match Rank:3
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GAGGATCCGA
TGGGGA-----
 A C G T A C T G C G T A A C T G A C T G T C G A A C G T A G T C G T A C C T A G C G T A
A G C T A C T G C T A G A C T G A C T G C T G A A C G T A C G T A C G T A C G T A C G T

RHOXF1/MA0719.1/Jaspar

Match Rank:4
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GAGGATCCGA
-NGGATTAN-
 A C T G C G T A A C T G A C T G T C G A A C G T A G T C G T A C C T A G C G T A
A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T A C G T

PB0077.1_Spdef_1/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GAGGATCCGA------
GTACATCCGGATTTTT
 A C T G C G T A A C T G A C T G T C G A A C G T A G T C G T A C C T A G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
T C A G G A C T C T G A A G T C C G T A C G A T T A G C G T A C A C T G A T C G C T G A G C A T G C A T G A C T A G C T A G C T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GAGGATCCGA
NNTGTGGATTSS-
 A C G T A C G T A C G T A C T G C G T A A C T G A C T G T C G A A C G T A G T C G T A C C T A G C G T A
C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G A C G T

ETV5/MA0765.1/Jaspar

Match Rank:7
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:GAGGATCCGA-
-NACTTCCGGT
 A C T G C G T A A C T G A C T G T C G A A C G T A G T C G T A C C T A G C G T A A C G T
A C G T G A T C T C G A A G T C C G A T C G A T G T A C G T A C A C T G A T C G G A C T

PB0181.1_Spdef_2/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GAGGATCCGA----
GATAACATCCTAGTAG
 A C G T A C G T A C T G C G T A A C T G A C T G T C G A A C G T A G T C G T A C C T A G C G T A A C G T A C G T A C G T A C G T
C T A G C G T A A C G T G C T A C T G A A G T C C G T A C G A T G A T C A G T C A G C T G C T A A C T G G C A T C G T A T C A G

Crx/MA0467.1/Jaspar

Match Rank:9
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GAGGATCCGA
AAGAGGATTAG-
 A C G T A C G T A C T G C G T A A C T G A C T G T C G A A C G T A G T C G T A C C T A G C G T A
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G A C G T

ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GAGGATCCGA
GTGGGCCCCA
 A C T G C G T A A C T G A C T G T C G A A C G T A G T C G T A C C T A G C G T A
T A C G G A C T A C T G A C T G C T A G A T G C A G T C A G T C A G T C C T G A